Variant report

Variant	rs2164535
Chromosome Location	chr4:86929179-86929180
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11724681	1.00[CEU][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12498346	0.90[JPT][hapmap]
rs168308	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs173201	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs182961	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2164536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2164537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2575680	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2589504	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2589509	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2665877	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28609702	0.81[ASN][1000 genomes]
rs346467	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs346471	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs346475	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs346478	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs346480	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs346484	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs346485	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs346488	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs346492	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs346498	0.83[CEU][hapmap]
rs346502	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs346503	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs346504	0.87[CEU][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs346505	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs346506	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs346507	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs35158998	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6851229	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs958860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958861	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86889400-86935000	Weak transcription	Psoas Muscle	Psoas
2	chr4:86916800-86929400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:86916800-86935800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:86916800-86985400	Weak transcription	Ovary	ovary
5	chr4:86917000-86931800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:86917000-86931800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:86917000-86931800	Weak transcription	Osteobl	bone
8	chr4:86917000-86932000	Weak transcription	NHLF	lung
9	chr4:86917000-86932400	Weak transcription	Fetal Lung	lung
10	chr4:86917000-86932400	Weak transcription	Right Ventricle	heart
11	chr4:86917000-86933800	Weak transcription	Gastric	stomach
12	chr4:86917000-86933800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr4:86917000-86935200	Weak transcription	Left Ventricle	heart
14	chr4:86917000-86935800	Weak transcription	Spleen	Spleen
15	chr4:86917000-86954000	Weak transcription	Pancreas	Pancrea
16	chr4:86917200-86932000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:86917400-86940400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr4:86917800-86931600	Weak transcription	NHDF-Ad	bronchial
19	chr4:86918000-86931800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr4:86919400-86941200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:86920200-86933800	Weak transcription	Aorta	Aorta
22	chr4:86921800-86932200	Weak transcription	Fetal Heart	heart
23	chr4:86922800-86935200	Weak transcription	Right Atrium	heart
24	chr4:86923400-86931800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:86925400-86937200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr4:86925600-86931800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:86925600-86932400	Weak transcription	HSMM	muscle
28	chr4:86925600-86935000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr4:86925600-86935200	Weak transcription	Adipose Nuclei	Adipose
30	chr4:86925600-86935600	Weak transcription	Primary B cells from peripheral blood	blood
31	chr4:86925600-86937400	Weak transcription	Fetal Kidney	kidney
32	chr4:86927400-86935400	Weak transcription	Primary B cells from cord blood	blood
33	chr4:86927800-86929400	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr4:86928200-86932200	Weak transcription	HSMMtube	muscle
35	chr4:86928400-86932000	Weak transcription	HUVEC	blood vessel
36	chr4:86928400-86937800	Weak transcription	Fetal Stomach	stomach
37	chr4:86928600-86930200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr4:86928600-86931600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr4:86928600-86953400	Weak transcription	Fetal Muscle Leg	muscle

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