Variant report

Variant	rs2167040
Chromosome Location	chr3:34529097-34529098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1013979	0.90[ASN][1000 genomes]
rs1191622	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1191624	0.85[ASN][1000 genomes]
rs1211518	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1212278	0.85[ASN][1000 genomes]
rs12186048	0.87[ASN][1000 genomes]
rs12487411	0.85[ASN][1000 genomes]
rs12629841	0.81[ASN][1000 genomes]
rs13083647	0.82[ASN][1000 genomes]
rs1317104	0.92[ASN][1000 genomes]
rs1358615	0.91[ASN][1000 genomes]
rs1358616	0.96[ASN][1000 genomes]
rs1406568	0.91[ASN][1000 genomes]
rs1518885	0.87[ASN][1000 genomes]
rs1518886	0.89[ASN][1000 genomes]
rs1518887	0.91[ASN][1000 genomes]
rs1529072	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1529075	0.87[ASN][1000 genomes]
rs1609403	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17031629	0.87[ASN][1000 genomes]
rs17031637	0.91[ASN][1000 genomes]
rs1881685	0.89[ASN][1000 genomes]
rs1919618	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1919619	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1919620	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1919621	0.85[ASN][1000 genomes]
rs1919622	0.81[ASN][1000 genomes]
rs1949470	0.91[ASN][1000 genomes]
rs2077806	0.90[ASN][1000 genomes]
rs2218729	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2951002	0.87[ASN][1000 genomes]
rs34843235	0.90[ASN][1000 genomes]
rs34896219	0.91[ASN][1000 genomes]
rs35236754	0.86[ASN][1000 genomes]
rs35488362	0.85[ASN][1000 genomes]
rs35703530	0.91[ASN][1000 genomes]
rs35905703	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35929503	0.91[ASN][1000 genomes]
rs4533591	0.84[ASN][1000 genomes]
rs4678469	0.83[AMR][1000 genomes]
rs67251788	0.89[ASN][1000 genomes]
rs6788612	0.83[AMR][1000 genomes]
rs6804250	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9311051	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9816663	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9824579	0.92[ASN][1000 genomes]
rs9836767	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9842247	0.91[ASN][1000 genomes]
rs9854604	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9858557	0.89[ASN][1000 genomes]
rs9861656	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9880774	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876683	chr3:34451940-34536095	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1007906	chr3:34466966-34607465	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876684	chr3:34502652-34566947	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34525400-34533200	Weak transcription	Aorta	Aorta

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