Variant report

Variant	rs2168962
Chromosome Location	chr8:34225867-34225868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1551654	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs2590467	0.86[EUR][1000 genomes]
rs2590468	0.86[EUR][1000 genomes]
rs2590469	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590476	0.86[EUR][1000 genomes]
rs2590479	0.86[EUR][1000 genomes]
rs2609620	0.95[ASN][1000 genomes]
rs2609627	0.81[EUR][1000 genomes]
rs2609633	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2609649	0.86[EUR][1000 genomes]
rs2609650	0.85[EUR][1000 genomes]
rs2609651	0.86[EUR][1000 genomes]
rs2719277	0.86[EUR][1000 genomes]
rs2719278	0.86[EUR][1000 genomes]
rs2719288	0.85[EUR][1000 genomes]
rs2719305	0.81[EUR][1000 genomes]
rs2719310	0.81[EUR][1000 genomes]
rs2719312	0.83[EUR][1000 genomes]
rs2719320	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2719321	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2719322	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2719329	0.86[EUR][1000 genomes]
rs28404543	0.88[ASN][1000 genomes]
rs2953926	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2953929	0.96[ASN][1000 genomes]
rs2953934	0.95[ASN][1000 genomes]
rs2953935	0.95[ASN][1000 genomes]
rs2959323	0.95[ASN][1000 genomes]
rs2959325	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2978837	0.96[ASN][1000 genomes]
rs4327859	0.86[EUR][1000 genomes]
rs4739544	0.97[ASN][1000 genomes]
rs6987252	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs978438	0.86[EUR][1000 genomes]
rs978439	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610931	chr8:34176474-34226215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34224600-34227200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:34225600-34226200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:34225800-34226200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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