Variant report

Variant	rs2169595
Chromosome Location	chr4:103344422-103344423
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:103341802..103347014-chr4:103347700..103350046,5	K562	blood:
2	chr4:103266645..103268237-chr4:103343914..103346547,2	K562	blood:
3	chr4:103339552..103341633-chr4:103343792..103346168,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11097781	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097782	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097783	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12510679	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12513230	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12513242	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12513366	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13113284	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13115343	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13119968	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13122985	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13132193	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13132235	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13132722	0.85[EUR][1000 genomes]
rs13137839	1.00[ASN][1000 genomes]
rs13150351	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150675	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17278473	0.82[TSI][hapmap]
rs17825737	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17825838	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2169596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699025	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699028	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817730	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6846971	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs926163	1.00[CHB][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2169595	UBE2D3	cis	cerebellum	SCAN
rs2169595	HEATR7A	trans	cerebellum	SCAN
rs2169595	SLC39A8	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103337800-103349800	Weak transcription	NHEK	skin
2	chr4:103342400-103345000	Weak transcription	Liver	Liver
3	chr4:103342400-103350800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:103342600-103350400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:103343200-103348200	Weak transcription	Hela-S3	cervix
6	chr4:103344400-103345000	Enhancers	Thymus	Thymus
7	chr4:103344400-103345000	Enhancers	Dnd41	blood

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