Variant report

Variant	rs2170190
Chromosome Location	chr8:50126092-50126093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10108796	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10957379	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10957380	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11785478	0.88[EUR][1000 genomes]
rs11987140	0.94[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs11992066	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12674890	0.93[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap]
rs17665537	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1842401	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4355782	0.83[EUR][1000 genomes]
rs55896231	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55904037	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56336550	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56368009	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58718013	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7013102	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72643127	0.83[EUR][1000 genomes]
rs72643128	0.83[EUR][1000 genomes]
rs72643129	0.83[EUR][1000 genomes]
rs72643150	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72643182	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72643185	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72643186	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72643199	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72644404	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72644405	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72644431	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72644448	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7830889	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1034908	chr8:50023423-50416049	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv539601	chr8:50023423-50416049	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1024410	chr8:50037085-50511501	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv428517	chr8:50094920-50232993	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv890855	chr8:50109365-50252962	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50123200-50128800	Weak transcription	Stomach Mucosa	stomach
2	chr8:50123200-50129600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:50125200-50131800	Weak transcription	K562	blood

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