Variant report

Variant	rs2174438
Chromosome Location	chr5:15890939-15890940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10520826	0.82[LWK][hapmap];0.85[YRI][hapmap]
rs1394655	0.90[LWK][hapmap];0.80[YRI][hapmap]
rs16867783	0.95[YRI][hapmap]
rs16867790	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs16867796	0.90[LWK][hapmap];0.82[MKK][hapmap];1.00[AMR][1000 genomes]
rs16867806	1.00[AMR][1000 genomes]
rs16867819	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs6894588	1.00[ASW][hapmap];1.00[LWK][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs73062151	1.00[AMR][1000 genomes]
rs73062160	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7713929	0.90[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv461986	chr5:15854098-15943683	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv597292	chr5:15854098-15943683	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15880600-15897000	Weak transcription	Left Ventricle	heart
2	chr5:15884800-15892000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:15886400-15891800	Weak transcription	Lung	lung
4	chr5:15887400-15899600	Weak transcription	Colon Smooth Muscle	Colon
5	chr5:15887600-15896400	Weak transcription	Fetal Heart	heart
6	chr5:15889400-15891800	Weak transcription	Fetal Stomach	stomach
7	chr5:15890600-15892000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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