Variant report

Variant	rs2175845
Chromosome Location	chr8:9696851-9696852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11778848	1.00[AMR][1000 genomes]
rs2137788	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2898236	1.00[AMR][1000 genomes]
rs4840451	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4841248	1.00[AMR][1000 genomes]
rs4841249	1.00[AMR][1000 genomes]
rs486885	1.00[AMR][1000 genomes]
rs542203	1.00[AMR][1000 genomes]
rs578685	1.00[AMR][1000 genomes]
rs589424	1.00[AMR][1000 genomes]
rs6601394	1.00[AMR][1000 genomes]
rs670475	1.00[AMR][1000 genomes]
rs6985570	1.00[AMR][1000 genomes]
rs7002484	1.00[AMR][1000 genomes]
rs7007468	0.87[AFR][1000 genomes]
rs7008206	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv16865	chr8:9642195-9712807	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9696200-9697000	Enhancers	H1 Cell Line	embryonic stem cell
2	chr8:9696400-9699200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:9696600-9697000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:9696600-9697000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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