Variant report

Variant	rs2176342
Chromosome Location	chr8:62972427-62972428
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:62967118..62970031-chr8:62972177..62973687,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10092058	0.83[EUR][1000 genomes]
rs1400512	0.84[ASN][1000 genomes]
rs1516994	0.87[ASN][1000 genomes]
rs1516995	0.84[ASN][1000 genomes]
rs1546639	0.84[ASN][1000 genomes]
rs1546640	0.84[ASN][1000 genomes]
rs1607125	0.90[ASN][1000 genomes]
rs1607131	0.85[EUR][1000 genomes]
rs2351083	0.90[ASN][1000 genomes]
rs28634373	0.84[ASN][1000 genomes]
rs28804830	0.87[ASN][1000 genomes]
rs344205	0.85[ASN][1000 genomes]
rs344208	0.84[ASN][1000 genomes]
rs344211	0.84[ASN][1000 genomes]
rs344229	0.83[ASN][1000 genomes]
rs344237	0.83[ASN][1000 genomes]
rs344239	0.83[ASN][1000 genomes]
rs344243	0.82[ASN][1000 genomes]
rs344244	0.85[ASN][1000 genomes]
rs344249	0.85[ASN][1000 genomes]
rs344253	0.85[ASN][1000 genomes]
rs344263	0.90[ASN][1000 genomes]
rs344264	0.90[ASN][1000 genomes]
rs344265	0.90[ASN][1000 genomes]
rs344266	0.90[ASN][1000 genomes]
rs344267	0.90[ASN][1000 genomes]
rs344271	0.85[ASN][1000 genomes]
rs35035266	0.84[ASN][1000 genomes]
rs35999143	0.87[ASN][1000 genomes]
rs4538868	0.84[EUR][1000 genomes]
rs55819473	0.84[ASN][1000 genomes]
rs55824588	0.84[EUR][1000 genomes]
rs56098200	0.82[ASN][1000 genomes]
rs57027979	0.84[ASN][1000 genomes]
rs57232729	0.84[ASN][1000 genomes]
rs59040850	0.90[ASN][1000 genomes]
rs59691363	0.84[ASN][1000 genomes]
rs61402923	0.82[ASN][1000 genomes]
rs61475697	0.82[ASN][1000 genomes]
rs62508546	0.87[ASN][1000 genomes]
rs73266837	0.84[EUR][1000 genomes]
rs7814557	0.84[ASN][1000 genomes]
rs7818829	0.84[ASN][1000 genomes]
rs7832965	0.84[ASN][1000 genomes]
rs9694964	0.90[ASN][1000 genomes]
rs992841	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890951	chr8:62889169-62989464	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv890952	chr8:62898648-62989464	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv890953	chr8:62899559-62989464	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv890954	chr8:62919691-63023132	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv890955	chr8:62919691-63062581	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1032321	chr8:62954064-63026567	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62971000-62974200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:62972000-62972800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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