Variant report

Variant	rs2178771
Chromosome Location	chr7:147663492-147663493
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11771941	0.86[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1541412	0.86[CHB][hapmap]
rs1574301	0.92[ASN][1000 genomes]
rs17237485	0.80[JPT][hapmap]
rs17237933	0.80[JPT][hapmap]
rs17432092	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17432209	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs1922889	0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs1997530	0.93[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap]
rs2141954	0.93[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap]
rs2178768	0.86[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap]
rs2189883	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.89[ASN][1000 genomes]
rs2204926	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs2214682	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2527049	0.91[MKK][hapmap]
rs2527070	0.89[ASN][1000 genomes]
rs2707553	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2707575	0.82[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2707576	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2707580	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2707581	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs2707585	0.93[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap]
rs2708248	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2708261	0.85[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs2708284	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs2710074	0.88[ASN][1000 genomes]
rs2710075	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2710077	0.89[ASN][1000 genomes]
rs2710082	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs2710157	0.82[CEU][hapmap];0.82[AMR][1000 genomes]
rs2859687	0.93[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs4725757	0.86[CHB][hapmap]
rs4726903	0.86[CHB][hapmap]
rs6946207	0.84[JPT][hapmap]
rs6953539	0.86[CHB][hapmap]
rs73168529	0.91[ASN][1000 genomes]
rs73168533	0.91[ASN][1000 genomes]
rs7794874	0.80[JPT][hapmap]
rs8180832	0.92[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889399	chr7:147643923-147712471	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv889400	chr7:147650411-147712471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2178771	CRYGN	cis	parietal	SCAN
rs2178771	OR6B1	cis	cerebellum	SCAN
rs2178771	OR2A12	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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