Variant report
Variant | rs2180254 |
---|---|
Chromosome Location | chr14:37869315-37869316 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
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(count:1 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-TTC6-2 | chr14:37869005-37871105 | NONHSAT036460 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10136553 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10142018 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10142165 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10147241 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10782385 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11156942 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11156948 | 1.00[AFR][1000 genomes] |
rs11156955 | 1.00[YRI][hapmap] |
rs1169874 | 1.00[AMR][1000 genomes] |
rs1169876 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
rs1546974 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1950521 | 1.00[AFR][1000 genomes] |
rs1950522 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1955951 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1956514 | 0.91[AFR][1000 genomes] |
rs2224335 | 1.00[AMR][1000 genomes] |
rs2415393 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2415403 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
rs28661298 | 1.00[AMR][1000 genomes] |
rs2899855 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2899859 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs4900882 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
rs6571806 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7148545 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7152968 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
rs7161417 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs8004502 | 1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs8006119 | 1.00[YRI][hapmap] |
rs8016485 | 1.00[AFR][1000 genomes] |
rs8181928 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs8181935 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs985776 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530038 | chr14:37590543-38336191 | Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
2 | nsv915783 | chr14:37607836-38002966 | Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
3 | nsv1036854 | chr14:37609535-38013533 | Active TSS ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
4 | nsv542045 | chr14:37609535-38013533 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
5 | nsv901639 | chr14:37743583-38038468 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
6 | nsv901640 | chr14:37782273-37963104 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
7 | nsv949227 | chr14:37785560-37963104 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
8 | esv1851939 | chr14:37810699-37963104 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
9 | nsv530639 | chr14:37837079-37934746 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
10 | nsv1043093 | chr14:37849742-37928753 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:37859400-37878600 | Weak transcription | Aorta | Aorta |
2 | chr14:37867800-37877800 | Weak transcription | Fetal Stomach | stomach |
3 | chr14:37867800-37898800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
4 | chr14:37868000-37877600 | Weak transcription | Ovary | ovary |
5 | chr14:37869000-37869400 | Enhancers | Fetal Intestine Large | intestine |
6 | chr14:37869200-37871600 | Weak transcription | Fetal Intestine Small | intestine |