Variant report

Variant	rs2180339
Chromosome Location	chr6:101469052-101469053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:101467552..101469829-chr6:101470681..101473630,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10485297	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10485425	0.80[ASN][1000 genomes]
rs1149271	0.83[CHB][hapmap];0.84[ASN][1000 genomes]
rs12199600	0.84[ASN][1000 genomes]
rs1342797	0.80[ASN][1000 genomes]
rs1342798	0.80[ASN][1000 genomes]
rs1418713	0.80[ASN][1000 genomes]
rs17054315	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17061152	0.87[AMR][1000 genomes]
rs17061158	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17061168	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17061190	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17061191	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17061195	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17061206	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17061229	0.85[JPT][hapmap]
rs17061234	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17061235	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17061236	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17061242	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17061360	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17061363	0.93[ASN][1000 genomes]
rs17061371	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17061406	0.86[ASN][1000 genomes]
rs17061413	0.88[ASN][1000 genomes]
rs17061496	0.80[ASN][1000 genomes]
rs17061507	0.80[ASN][1000 genomes]
rs17061509	0.80[ASN][1000 genomes]
rs17061513	0.80[ASN][1000 genomes]
rs17061516	0.80[ASN][1000 genomes]
rs17061520	0.80[ASN][1000 genomes]
rs17061525	0.80[ASN][1000 genomes]
rs2399728	0.80[ASN][1000 genomes]
rs3905201	0.80[ASN][1000 genomes]
rs4427005	0.97[ASN][1000 genomes]
rs4637650	0.88[ASN][1000 genomes]
rs614094	0.96[ASN][1000 genomes]
rs648360	0.96[ASN][1000 genomes]
rs705619	0.93[ASN][1000 genomes]
rs73508859	0.97[ASN][1000 genomes]
rs73760737	0.97[ASN][1000 genomes]
rs73760738	0.97[ASN][1000 genomes]
rs7451697	0.80[ASN][1000 genomes]
rs768985	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9485429	0.97[ASN][1000 genomes]
rs9498435	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv886457	chr6:101158950-101487473	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1019213	chr6:101225650-101623140	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv538391	chr6:101225650-101623140	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	esv2763587	chr6:101277874-101510491	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101468800-101470400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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