Variant report

Variant	rs2182901
Chromosome Location	chr9:16406897-16406898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10511619	0.81[CEU][hapmap]
rs10511621	0.92[YRI][hapmap]
rs10810565	0.88[CEU][hapmap]
rs12338207	0.88[CEU][hapmap]
rs1927621	0.88[CEU][hapmap];0.82[GIH][hapmap]
rs1927636	0.88[CEU][hapmap];0.80[GIH][hapmap]
rs2149163	0.82[CEU][hapmap]
rs4961718	0.85[JPT][hapmap]
rs7021534	0.83[YRI][hapmap]
rs7046416	0.88[CEU][hapmap]
rs7851973	0.92[YRI][hapmap]
rs9298763	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9406647	0.91[ASN][1000 genomes]
rs9407774	0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2182901	PILRA	trans	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16400000-16411000	Weak transcription	NHLF	lung
2	chr9:16400600-16410200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:16400600-16413800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:16401000-16408800	Weak transcription	A549	lung
5	chr9:16405800-16416400	Weak transcription	HUVEC	blood vessel
6	chr9:16406400-16407000	Enhancers	Ovary	ovary
7	chr9:16406400-16407400	Enhancers	Fetal Kidney	kidney
8	chr9:16406400-16408400	Enhancers	Fetal Lung	lung
9	chr9:16406800-16407000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:16406800-16407200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr9:16406800-16407200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:16406800-16407200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:16406800-16407200	Enhancers	Fetal Muscle Leg	muscle
14	chr9:16406800-16407200	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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