Variant report

Variant	rs2184492
Chromosome Location	chr9:87299235-87299236
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11162359	0.84[EUR][1000 genomes]
rs12120668	0.84[ASN][1000 genomes]
rs277355	0.81[ASN][1000 genomes]
rs4559444	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045909	chr9:86758840-87456096	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1048977	chr9:86764112-87430491	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:87291400-87314800	Weak transcription	Ovary	ovary
2	chr9:87292000-87318000	Weak transcription	Fetal Kidney	kidney
3	chr9:87294000-87300600	Weak transcription	Adipose Nuclei	Adipose
4	chr9:87296200-87300600	Weak transcription	Brain Substantia Nigra	brain
5	chr9:87296600-87299600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:87296600-87300200	Weak transcription	Brain Angular Gyrus	brain
7	chr9:87296800-87300600	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:87297800-87300400	Weak transcription	Brain Anterior Caudate	brain
9	chr9:87297800-87300600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr9:87298000-87300200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr9:87298000-87300600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr9:87298200-87300400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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