Variant report

Variant	rs2184784
Chromosome Location	chr6:133646412-133646413
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10457606	0.84[EUR][1000 genomes]
rs10872404	0.80[CEU][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11154722	0.80[CEU][hapmap];0.89[EUR][1000 genomes]
rs11154723	0.88[EUR][1000 genomes]
rs12527741	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs1336519	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1336522	0.90[YRI][hapmap]
rs1932746	0.80[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6569877	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569878	0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs6900552	0.95[CHB][hapmap];0.91[JPT][hapmap];0.98[ASN][1000 genomes]
rs6903792	0.81[AFR][1000 genomes]
rs6924629	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930942	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937974	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs9375956	0.84[EUR][1000 genomes]
rs9399059	0.80[CEU][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9483575	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs950374	0.80[CEU][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133613000-133655000	Weak transcription	Hela-S3	cervix
2	chr6:133640200-133647200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:133643200-133658200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:133646200-133648000	Enhancers	Psoas Muscle	Psoas
5	chr6:133646200-133648200	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr6:133646400-133648600	Enhancers	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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