Variant report

Variant	rs2187893
Chromosome Location	chr1:172881927-172881928
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10798242	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10798244	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10912491	0.97[ASN][1000 genomes]
rs10912497	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10912501	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10912502	0.93[EUR][1000 genomes]
rs12025176	0.97[ASN][1000 genomes]
rs12035082	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12037203	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12037606	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12088638	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12402215	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12407389	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12409216	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12410129	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12411259	0.81[ASN][1000 genomes]
rs12565596	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12567579	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12728265	0.95[ASN][1000 genomes]
rs12739009	1.00[JPT][hapmap]
rs12748081	0.97[ASN][1000 genomes]
rs1883475	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894636	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2051629	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2206363	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2206365	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2206366	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2213746	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2227203	0.82[ASN][1000 genomes]
rs2422257	1.00[JPT][hapmap]
rs2422260	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35715673	0.97[ASN][1000 genomes]
rs4145468	0.97[ASN][1000 genomes]
rs4145469	1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4916199	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4916285	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4916286	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4916287	0.90[EUR][1000 genomes]
rs4916288	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916289	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4916290	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6668693	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6674470	0.80[EUR][1000 genomes]
rs6688532	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7527986	1.00[JPT][hapmap]
rs7539319	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7539951	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs926472	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs926473	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs926474	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3587	chr1:172836950-172882218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172879400-172884200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:172880000-172883800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:172881200-172882400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:172881400-172882200	ZNF genes & repeats	NHLF	lung
5	chr1:172881400-172883000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:172881400-172883000	ZNF genes & repeats	Dnd41	blood
7	chr1:172881400-172883000	ZNF genes & repeats	NHEK	skin
8	chr1:172881800-172882200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:172881800-172882200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:172881800-172882600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:172881800-172882600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:172881800-172882800	ZNF genes & repeats	HSMMtube	muscle
13	chr1:172881800-172882800	ZNF genes & repeats	HUVEC	blood vessel
14	chr1:172881800-172883000	ZNF genes & repeats	A549	lung

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