Variant report

Variant	rs2188955
Chromosome Location	chr11:17375185-17375186
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:17373205..17377100-chr11:17409140..17413152,4	K562	blood:
2	chr11:17374560..17375439-chr6:160114522..160115192,2	Hela-S3	cervix:
3	chr1:40122728..40125499-chr11:17373611..17375772,2	K562	blood:
4	chr11:17230080..17232225-chr11:17374978..17377752,3	K562	blood:
5	chr11:17374927..17377561-chr11:17380204..17381748,2	MCF-7	breast:
6	chr11:17374004..17375580-chr11:17385571..17388516,2	K562	blood:
7	chr11:17227592..17229554-chr11:17374779..17376818,3	K562	blood:
8	chr11:17094939..17097323-chr11:17374509..17376379,2	K562	blood:
9	chr11:17229934..17232096-chr11:17374472..17377356,2	MCF-7	breast:
10	chr11:17094939..17099575-chr11:17373026..17376765,6	K562	blood:
11	chr11:17374681..17376841-chr11:18414734..18417596,2	K562	blood:
12	chr11:17263778..17266098-chr11:17373764..17376124,2	K562	blood:
13	chr11:17373252..17376530-chr11:17405235..17408726,4	K562	blood:
14	chr11:17374940..17375484-chr19:12902130..12902935,2	Hela-S3	cervix:
15	chr11:17371462..17373820-chr11:17373868..17375606,2	MCF-7	breast:
16	chr11:17297477..17299897-chr11:17373584..17375406,2	K562	blood:
17	chr11:17375109..17378039-chr11:17387177..17388744,2	MCF-7	breast:
18	chr11:17374777..17375430-chr2:47403469..47404160,2	Hela-S3	cervix:
19	chr11:17294885..17299963-chr11:17371989..17377835,11	K562	blood:
20	chr11:17312629..17314667-chr11:17373506..17375869,2	K562	blood:
21	chr11:17227592..17232225-chr11:17372606..17377021,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000143933	Chromatin interaction
ENSG00000070081	Chromatin interaction
ENSG00000110700	Chromatin interaction
ENSG00000187486	Chromatin interaction
ENSG00000221322	Chromatin interaction
ENSG00000134333	Chromatin interaction
ENSG00000171223	Chromatin interaction
ENSG00000188211	Chromatin interaction
ENSG00000011405	Chromatin interaction
ENSG00000201403	Chromatin interaction
ENSG00000272034	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2214285	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17372600-17375600	Active TSS	Brain Anterior Caudate	brain
2	chr11:17372600-17375600	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr11:17372600-17375800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr11:17372600-17376000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:17372800-17375600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:17372800-17375600	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr11:17372800-17375600	Active TSS	Rectal Smooth Muscle	rectum
8	chr11:17372800-17375600	Active TSS	NHDF-Ad	bronchial
9	chr11:17372800-17375800	Active TSS	Aorta	Aorta
10	chr11:17372800-17376000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
11	chr11:17372800-17376000	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr11:17372800-17376000	Active TSS	Brain Substantia Nigra	brain
13	chr11:17372800-17376000	Active TSS	Ovary	ovary
14	chr11:17372800-17376200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:17372800-17376600	Active TSS	Brain Hippocampus Middle	brain
16	chr11:17372800-17376600	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr11:17373000-17375400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
18	chr11:17373000-17375400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
19	chr11:17373000-17375400	Active TSS	Small Intestine	intestine
20	chr11:17373000-17375600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:17373000-17375600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:17373000-17375800	Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr11:17373000-17375800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:17373000-17376000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:17373000-17376000	Active TSS	Right Atrium	heart
26	chr11:17373000-17376200	Active TSS	A549	lung
27	chr11:17373200-17375400	Active TSS	Sigmoid Colon	Sigmoid Colon
28	chr11:17373200-17375600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:17373200-17375600	Active TSS	Left Ventricle	heart
30	chr11:17373200-17375600	Active TSS	Lung	lung
31	chr11:17373200-17375800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:17373200-17375800	Active TSS	HSMMtube	muscle
33	chr11:17373200-17376600	Active TSS	Brain Angular Gyrus	brain
34	chr11:17373400-17375800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr11:17373400-17375800	Active TSS	Thymus	Thymus
36	chr11:17373400-17375800	Active TSS	NHLF	lung
37	chr11:17373600-17376000	Active TSS	Right Ventricle	heart
38	chr11:17373800-17375600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
39	chr11:17373800-17376000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
40	chr11:17374000-17375400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:17374000-17375400	Flanking Bivalent TSS/Enh	Dnd41	blood
42	chr11:17374000-17375600	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
43	chr11:17374000-17375600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
44	chr11:17374000-17375800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:17374000-17376000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
46	chr11:17374000-17376000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:17374000-17376000	Flanking Active TSS	HMEC	breast
48	chr11:17374000-17376200	Flanking Active TSS	Liver	Liver
49	chr11:17374200-17375200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:17374200-17375800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood

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