Variant report

Variant	rs2191910
Chromosome Location	chr2:210571012-210571013
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 140 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs10165558	0.82[ASN][1000 genomes]
rs10169017	0.91[ASN][1000 genomes]
rs10172200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10183590	0.98[ASN][1000 genomes]
rs10183604	0.98[ASN][1000 genomes]
rs10189911	0.81[ASN][1000 genomes]
rs10193321	0.91[ASN][1000 genomes]
rs10196314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10196600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10198751	0.85[JPT][hapmap]
rs10206817	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs10490021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10804176	0.98[ASN][1000 genomes]
rs10932305	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11677975	0.98[ASN][1000 genomes]
rs11682692	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11687043	0.96[ASN][1000 genomes]
rs11691800	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11691894	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11692075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11692345	0.96[ASN][1000 genomes]
rs12613705	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs12614031	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12615372	0.87[JPT][hapmap]
rs12616589	0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs12618080	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12619253	0.98[ASN][1000 genomes]
rs12619409	0.98[ASN][1000 genomes]
rs12620654	0.87[JPT][hapmap]
rs13385585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13409134	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13419929	0.93[JPT][hapmap]
rs13422521	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13423127	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1509465	0.87[JPT][hapmap]
rs1509468	0.85[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs1509469	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs1509470	0.80[ASN][1000 genomes]
rs16843329	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs16843351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16843354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16843360	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16843382	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16843421	0.93[ASN][1000 genomes]
rs16843453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16843515	0.98[ASN][1000 genomes]
rs16843544	0.98[ASN][1000 genomes]
rs16843614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16843618	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16843626	0.98[ASN][1000 genomes]
rs16843651	0.98[ASN][1000 genomes]
rs2048250	0.87[JPT][hapmap]
rs2215624	0.98[ASN][1000 genomes]
rs2215625	0.88[ASN][1000 genomes]
rs2239552	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2239553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2239672	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2268042	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2268044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2268045	0.98[ASN][1000 genomes]
rs2271252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2284359	0.98[ASN][1000 genomes]
rs2284360	0.98[ASN][1000 genomes]
rs2286849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2286850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2300154	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2366112	0.87[JPT][hapmap]
rs2663647	0.92[CEU][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2663648	0.87[JPT][hapmap]
rs2663649	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs2663651	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs2663653	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs2663658	0.90[ASN][1000 genomes]
rs2663659	0.87[JPT][hapmap]
rs2710477	0.84[JPT][hapmap]
rs2710479	0.82[JPT][hapmap]
rs2710480	0.86[ASN][1000 genomes]
rs2710482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2710486	0.87[JPT][hapmap]
rs28435689	0.91[ASN][1000 genomes]
rs28666486	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28758270	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs288079	0.80[JPT][hapmap]
rs288081	0.80[JPT][hapmap]
rs288087	0.80[JPT][hapmap]
rs3738935	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3754597	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3768810	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3768811	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3768813	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3768814	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3768815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3768816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3768820	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3768821	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3768822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3768823	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3768826	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3768827	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3768828	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3768830	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3768832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3768833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3768834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3768835	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3820746	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3820748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3886931	0.98[ASN][1000 genomes]
rs4673486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56659802	0.96[ASN][1000 genomes]
rs56825045	0.98[ASN][1000 genomes]
rs57542539	0.98[ASN][1000 genomes]
rs57853945	0.98[ASN][1000 genomes]
rs58295121	0.97[ASN][1000 genomes]
rs58525719	0.98[ASN][1000 genomes]
rs58779755	0.93[ASN][1000 genomes]
rs59155421	0.96[ASN][1000 genomes]
rs59555743	0.98[ASN][1000 genomes]
rs60138527	0.80[ASN][1000 genomes]
rs61333809	0.98[ASN][1000 genomes]
rs61420319	0.98[ASN][1000 genomes]
rs6709925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6717554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6720659	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6724834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6726061	0.87[JPT][hapmap]
rs6733319	0.87[JPT][hapmap]
rs6746029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs723683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs741006	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs741007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7567257	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7594601	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7596811	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs906831	0.87[JPT][hapmap]
rs9288410	0.87[JPT][hapmap]
rs962475	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs994862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875765	chr2:210537660-210618203	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210531400-210587800	Weak transcription	Brain Angular Gyrus	brain
2	chr2:210537000-210596800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:210541800-210596400	Weak transcription	Gastric	stomach
4	chr2:210544000-210596600	Weak transcription	Ovary	ovary
5	chr2:210544400-210598600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:210552800-210599400	Weak transcription	Pancreas	Pancrea
7	chr2:210553000-210583800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:210555600-210600200	Weak transcription	Left Ventricle	heart
9	chr2:210558000-210578800	Weak transcription	HUVEC	blood vessel
10	chr2:210558000-210598600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr2:210558200-210577200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr2:210559600-210574600	Weak transcription	Aorta	Aorta
13	chr2:210559600-210588400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:210562200-210580600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr2:210562200-210581800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:210562400-210583200	Weak transcription	Brain Hippocampus Middle	brain
17	chr2:210562400-210593600	Weak transcription	Fetal Brain Male	brain
18	chr2:210565600-210574400	Weak transcription	Brain Germinal Matrix	brain
19	chr2:210567000-210585000	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr2:210568800-210572400	Strong transcription	Brain Anterior Caudate	brain
21	chr2:210568800-210573200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr2:210570000-210571800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr2:210570200-210572600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr2:210570200-210572600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr2:210570600-210575800	Strong transcription	Fetal Brain Female	brain

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