Variant report

Variant	rs2191916
Chromosome Location	chr2:210642715-210642716
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2215626	0.93[AFR][1000 genomes]
rs2887862	0.83[AFR][1000 genomes]
rs6435539	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7608699	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210637600-210653800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:210638200-210661400	Weak transcription	Fetal Brain Female	brain
3	chr2:210638400-210651800	Weak transcription	Brain Angular Gyrus	brain
4	chr2:210638400-210652200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:210638400-210660000	Weak transcription	Fetal Brain Male	brain
6	chr2:210640400-210646600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:210640600-210648200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:210641200-210642800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr2:210641400-210643000	Strong transcription	Brain Inferior Temporal Lobe	brain
10	chr2:210641400-210644400	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr2:210641600-210643800	Weak transcription	Brain Anterior Caudate	brain
12	chr2:210641800-210643600	Strong transcription	Brain Germinal Matrix	brain
13	chr2:210642200-210643800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:210642600-210645200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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