Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10250078	1.00[AMR][1000 genomes]
rs10271797	1.00[YRI][hapmap]
rs12705235	0.87[YRI][hapmap]
rs1465342	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs1468861	1.00[AMR][1000 genomes]
rs1468864	0.87[ASW][hapmap];0.90[MKK][hapmap];0.90[YRI][hapmap]
rs1548938	0.89[YRI][hapmap]
rs1861610	1.00[AMR][1000 genomes]
rs2080483	1.00[YRI][hapmap]
rs2193198	1.00[YRI][hapmap]
rs2193200	0.87[ASW][hapmap];0.86[MKK][hapmap];0.90[YRI][hapmap]
rs2385238	0.89[YRI][hapmap]
rs2385251	1.00[YRI][hapmap]
rs2385254	0.90[YRI][hapmap]
rs2470962	1.00[AMR][1000 genomes]
rs4431535	1.00[AMR][1000 genomes]
rs4623345	1.00[AMR][1000 genomes]
rs4730033	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4730046	1.00[AMR][1000 genomes]
rs6944590	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6958342	1.00[AMR][1000 genomes]
rs6960459	1.00[AFR][1000 genomes]
rs7784639	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7801079	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7801340	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024532	chr7:104281393-104299847	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104285000-104290400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search: