Variant report

Variant	rs2193200
Chromosome Location	chr7:104291218-104291219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10246540	0.92[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap]
rs10255159	0.81[YRI][hapmap]
rs10270888	0.90[YRI][hapmap]
rs10271797	0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10272959	0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs11761636	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773248	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs11977439	0.92[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap]
rs11983223	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs1465342	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468864	1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1548938	0.80[YRI][hapmap]
rs16870065	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs17139105	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs17139109	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs17139166	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs17139722	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17139736	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17141055	1.00[EUR][1000 genomes]
rs17141299	1.00[EUR][1000 genomes]
rs2008042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2080483	0.90[YRI][hapmap]
rs2193198	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs2193199	0.87[ASW][hapmap];0.86[MKK][hapmap];0.90[YRI][hapmap]
rs2193205	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2193212	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs2193214	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2385238	0.80[YRI][hapmap]
rs2385247	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs2385248	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2385251	0.83[LWK][hapmap];0.90[YRI][hapmap]
rs2385254	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3919550	0.92[CHB][hapmap];0.80[CHD][hapmap];0.89[JPT][hapmap]
rs4131017	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs4140743	1.00[EUR][1000 genomes]
rs4357228	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4549708	1.00[EUR][1000 genomes]
rs4612275	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4730033	0.89[AFR][1000 genomes]
rs57123751	1.00[EUR][1000 genomes]
rs57138274	1.00[EUR][1000 genomes]
rs57698969	1.00[EUR][1000 genomes]
rs57935592	1.00[EUR][1000 genomes]
rs61685636	1.00[EUR][1000 genomes]
rs6944590	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6948948	0.92[CHB][hapmap];0.80[CHD][hapmap];0.89[JPT][hapmap]
rs6967399	0.92[CHB][hapmap];0.80[CHD][hapmap];0.89[JPT][hapmap]
rs759533	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7784639	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7801079	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7801340	0.88[YRI][hapmap];0.89[AFR][1000 genomes]
rs7805947	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs929661	0.92[CHB][hapmap];0.80[CHD][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024532	chr7:104281393-104299847	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104290000-104292800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:104290400-104295000	Enhancers	Colon Smooth Muscle	Colon
3	chr7:104290400-104295600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:104290600-104291400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:104290800-104293200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:104291000-104295600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr7:104291200-104291400	Enhancers	Brain Hippocampus Middle	brain
8	chr7:104291200-104292400	Enhancers	Brain Anterior Caudate	brain
9	chr7:104291200-104292400	Enhancers	Brain Substantia Nigra	brain

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