Variant report

Variant	rs2194322
Chromosome Location	chr10:16296100-16296101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs11150333	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11150334	0.82[ASN][1000 genomes]
rs11866375	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11866803	0.86[ASN][1000 genomes]
rs12446304	0.84[ASN][1000 genomes]
rs12446810	0.86[ASN][1000 genomes]
rs12448656	0.87[ASN][1000 genomes]
rs13331118	0.85[ASN][1000 genomes]
rs13334887	0.84[ASN][1000 genomes]
rs1453327	0.81[ASN][1000 genomes]
rs1453328	0.81[ASN][1000 genomes]
rs1469123	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1469124	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1469125	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1469126	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1477381	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1964298	0.83[ASN][1000 genomes]
rs2098726	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2113196	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2113197	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2123627	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2167889	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2194321	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2216753	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2244452	0.83[ASN][1000 genomes]
rs2316923	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2549828	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2549833	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2549835	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2549836	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2549837	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2549838	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2549839	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2549840	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2549841	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2549842	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2549843	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2549844	0.81[ASN][1000 genomes]
rs2549846	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2549847	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2549848	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2549852	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2549853	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2549854	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2549855	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2549856	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2549857	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2549858	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2549859	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2549861	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2549863	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2549865	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2549866	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2549867	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2549868	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2549869	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2549870	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2549871	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2549872	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2549879	0.82[ASN][1000 genomes]
rs2549883	0.80[ASN][1000 genomes]
rs2602409	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2602410	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2602411	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2602412	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2602413	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2602414	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2602416	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2602417	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2602418	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2602419	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2602423	0.88[ASN][1000 genomes]
rs2602424	0.83[ASN][1000 genomes]
rs2602433	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2602434	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2602435	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2602436	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2602437	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2602440	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2602441	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2602443	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2602446	0.81[ASN][1000 genomes]
rs2602448	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2602449	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2602453	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2911148	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2911149	0.81[AMR][1000 genomes]
rs2911150	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2911151	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2970079	0.82[ASN][1000 genomes]
rs2970081	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2970083	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2970084	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2970085	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2970086	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3112035	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3112036	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3784814	0.84[ASN][1000 genomes]
rs3826048	0.80[ASN][1000 genomes]
rs56306230	0.88[ASN][1000 genomes]
rs60779117	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6564814	0.82[ASN][1000 genomes]
rs66516157	0.82[ASN][1000 genomes]
rs71400133	0.86[ASN][1000 genomes]
rs7196960	0.85[ASN][1000 genomes]
rs9888895	0.86[ASN][1000 genomes]
rs9889194	0.86[ASN][1000 genomes]
rs9921448	0.81[ASN][1000 genomes]
rs9921914	0.80[ASN][1000 genomes]
rs9923948	0.86[ASN][1000 genomes]
rs9931292	0.81[ASN][1000 genomes]
rs9932857	0.86[ASN][1000 genomes]
rs9934957	0.86[ASN][1000 genomes]
rs9936366	0.87[ASN][1000 genomes]
rs9938541	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530146	chr10:15722937-16522747	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv870420	chr10:16225427-16541252	Flanking Active TSS Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv894904	chr10:16233175-16477106	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831796	chr10:16240111-16393044	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2194322	CENPN	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:16295800-16299600	Weak transcription	H9 Cell Line	embryonic stem cell

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