Variant report

Variant	rs2194962
Chromosome Location	chr11:60065105-60065106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10750930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792261	0.90[ASN][1000 genomes]
rs1365246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4644658	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs535413	0.81[JPT][hapmap]
rs585540	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs587634	0.81[JPT][hapmap]
rs588448	0.81[JPT][hapmap]
rs620368	0.81[JPT][hapmap]
rs641829	0.81[JPT][hapmap]
rs6591563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs6591564	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs661376	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs662674	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs668095	0.84[CHB][hapmap]
rs668134	0.84[CHB][hapmap]
rs7104122	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7127750	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:60056800-60069000	Weak transcription	Placenta	Placenta
2	chr11:60058000-60074800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:60059200-60078400	Weak transcription	Primary B cells from cord blood	blood
4	chr11:60059600-60066800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr11:60064000-60066000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr11:60064600-60066600	Strong transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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