Variant report

Variant	rs2198219
Chromosome Location	chr8:63370920-63370921
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:63153468..63155828-chr8:63369225..63371318,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10104622	0.80[EUR][1000 genomes]
rs13266781	0.80[EUR][1000 genomes]
rs13267568	0.80[EUR][1000 genomes]
rs13267809	0.93[EUR][1000 genomes]
rs1551199	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2167499	0.93[EUR][1000 genomes]
rs2218911	1.00[EUR][1000 genomes]
rs2351662	0.93[EUR][1000 genomes]
rs2351664	0.93[EUR][1000 genomes]
rs2351665	0.93[EUR][1000 genomes]
rs2351666	0.93[EUR][1000 genomes]
rs2351668	0.93[EUR][1000 genomes]
rs2351669	0.93[EUR][1000 genomes]
rs2351670	0.93[EUR][1000 genomes]
rs2351671	0.93[EUR][1000 genomes]
rs2351672	0.93[EUR][1000 genomes]
rs2351674	0.80[EUR][1000 genomes]
rs2351676	0.93[EUR][1000 genomes]
rs2351943	0.86[EUR][1000 genomes]
rs2882745	0.93[EUR][1000 genomes]
rs4442139	0.93[EUR][1000 genomes]
rs4595118	0.93[EUR][1000 genomes]
rs4737601	0.93[EUR][1000 genomes]
rs4737602	0.93[EUR][1000 genomes]
rs4737603	0.93[EUR][1000 genomes]
rs4738960	0.93[EUR][1000 genomes]
rs4738961	0.93[EUR][1000 genomes]
rs4738962	0.93[EUR][1000 genomes]
rs6472010	0.93[EUR][1000 genomes]
rs6472011	0.93[EUR][1000 genomes]
rs6472012	0.93[EUR][1000 genomes]
rs6472013	0.93[EUR][1000 genomes]
rs6472025	0.93[EUR][1000 genomes]
rs6472027	0.93[EUR][1000 genomes]
rs6991069	0.93[EUR][1000 genomes]
rs6993342	0.93[EUR][1000 genomes]
rs6999222	0.93[EUR][1000 genomes]
rs7011126	0.93[EUR][1000 genomes]
rs7819648	0.93[EUR][1000 genomes]
rs7819669	0.93[EUR][1000 genomes]
rs7837633	0.93[EUR][1000 genomes]
rs9298063	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024863	chr8:63275987-63439650	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539636	chr8:63275987-63439650	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv982137	chr8:63277579-63399979	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv831339	chr8:63312449-63501127	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63368200-63374600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63370400-63372000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:63370600-63371000	Enhancers	Stomach Mucosa	stomach
4	chr8:63370600-63372200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:63370600-63373400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr8:63370600-63374200	Enhancers	Fetal Intestine Large	intestine

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