Variant report

Variant	rs2198706
Chromosome Location	chr11:18213135-18213136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr11:18213023-18213200	K562	blood:	n/a	n/a
2	SPI1	chr11:18212989-18213306	GM12878	blood:	n/a	n/a
3	SPI1	chr11:18212929-18213279	GM12891	blood:	n/a	n/a
4	SPI1	chr11:18213050-18213201	GM12878	blood:	n/a	n/a
5	SPI1	chr11:18212999-18213302	GM12891	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000255470	TF binding region
ENSG00000224002	TF binding region

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1001139	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11024503	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11024511	0.80[AMR][1000 genomes]
rs11024512	0.81[AMR][1000 genomes]
rs11024522	0.86[AMR][1000 genomes]
rs11603777	0.81[ASN][1000 genomes]
rs12285875	0.83[ASN][1000 genomes]
rs1350098	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1378603	0.80[EUR][1000 genomes]
rs1378605	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1378606	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1378607	0.95[CEU][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1378608	0.95[CEU][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1378611	0.96[CEU][hapmap];0.96[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1378612	0.95[CEU][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1455787	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1455788	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1455790	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1531104	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1531105	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1840596	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1840597	0.93[CEU][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1840598	0.91[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1869788	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1902266	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1968729	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1968730	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1968731	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1968732	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2014694	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2078066	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2124375	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2124376	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2124377	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2246055	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2246304	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2246305	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2246388	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap]
rs2246395	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2253938	0.95[CEU][hapmap];0.95[JPT][hapmap]
rs2403248	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2445146	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2445148	0.93[ASN][1000 genomes]
rs2445149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2445164	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs2445165	0.96[CEU][hapmap];0.96[JPT][hapmap]
rs2445180	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2445182	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2445183	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2445186	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2445187	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2445196	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2445197	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2445198	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2445199	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2445203	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2445204	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2445205	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2445206	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2445207	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2445208	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2460832	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2468772	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2468774	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2468820	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2468824	0.96[CEU][hapmap];0.96[JPT][hapmap]
rs2468825	0.95[CEU][hapmap];0.95[JPT][hapmap]
rs2468830	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2468831	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2468851	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2468853	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2860276	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2860278	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34114573	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4417246	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs4630269	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73434204	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv428569	chr11:18194030-18350869	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18211200-18225800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:18212800-18213200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:18212800-18213200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:18212800-18213200	Enhancers	Monocytes-CD14+_RO01746	blood

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