Variant report

Variant	rs2199837
Chromosome Location	chr8:63653487-63653488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1471511	0.82[EUR][1000 genomes]
rs1471512	0.82[EUR][1000 genomes]
rs1600538	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16918940	0.82[EUR][1000 genomes]
rs16929414	0.82[EUR][1000 genomes]
rs16929454	0.82[EUR][1000 genomes]
rs16929506	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16929512	0.82[EUR][1000 genomes]
rs16929515	0.82[EUR][1000 genomes]
rs16929516	0.82[EUR][1000 genomes]
rs16929517	0.82[EUR][1000 genomes]
rs16929568	0.82[EUR][1000 genomes]
rs34116232	0.82[EUR][1000 genomes]
rs3943271	0.82[EUR][1000 genomes]
rs4737608	0.81[EUR][1000 genomes]
rs4738995	0.82[EUR][1000 genomes]
rs4738996	0.82[EUR][1000 genomes]
rs4739000	0.82[EUR][1000 genomes]
rs4739002	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4739003	0.95[ASN][1000 genomes]
rs4739004	0.82[EUR][1000 genomes]
rs4739008	0.82[EUR][1000 genomes]
rs56074674	0.82[EUR][1000 genomes]
rs56209195	0.82[EUR][1000 genomes]
rs56254488	0.82[EUR][1000 genomes]
rs62512374	0.82[EUR][1000 genomes]
rs6996757	0.82[EUR][1000 genomes]
rs7003189	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7004183	0.80[EUR][1000 genomes]
rs7005977	0.82[EUR][1000 genomes]
rs7008374	0.82[EUR][1000 genomes]
rs72653224	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7836787	0.82[EUR][1000 genomes]
rs7836794	0.80[EUR][1000 genomes]
rs931130	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63649200-63660200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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