Variant report

Variant	rs2200464
Chromosome Location	chr3:85157148-85157149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10433523	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11127873	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11127876	0.81[EUR][1000 genomes]
rs11127877	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11127880	0.97[ASN][1000 genomes]
rs11713170	0.84[EUR][1000 genomes]
rs13059287	0.97[ASN][1000 genomes]
rs13061527	0.85[EUR][1000 genomes]
rs13064817	0.83[EUR][1000 genomes]
rs13072305	0.81[EUR][1000 genomes]
rs13097560	0.81[EUR][1000 genomes]
rs13101042	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1994315	0.82[EUR][1000 genomes]
rs2062431	0.82[EUR][1000 genomes]
rs2171140	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2171141	0.99[ASN][1000 genomes]
rs2200461	0.82[EUR][1000 genomes]
rs2220243	0.82[EUR][1000 genomes]
rs2326126	0.82[EUR][1000 genomes]
rs2326128	0.86[EUR][1000 genomes]
rs34201102	0.82[EUR][1000 genomes]
rs4410457	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4856560	0.82[EUR][1000 genomes]
rs62250629	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6549011	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6549012	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66500121	0.82[EUR][1000 genomes]
rs6765011	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6768559	0.82[EUR][1000 genomes]
rs6775464	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6775752	0.81[EUR][1000 genomes]
rs6788656	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6790864	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6791035	0.81[EUR][1000 genomes]
rs6796256	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6796393	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6798922	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7623714	0.85[EUR][1000 genomes]
rs7632628	0.99[ASN][1000 genomes]
rs7632909	0.99[ASN][1000 genomes]
rs7636138	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7645049	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7645952	0.82[EUR][1000 genomes]
rs7646739	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7647649	0.83[EUR][1000 genomes]
rs9284802	0.80[EUR][1000 genomes]
rs9309969	0.83[EUR][1000 genomes]
rs9309970	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9814390	0.82[EUR][1000 genomes]
rs9814600	0.86[EUR][1000 genomes]
rs9814835	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9819278	0.84[EUR][1000 genomes]
rs9820587	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9839194	0.81[EUR][1000 genomes]
rs9855054	0.82[EUR][1000 genomes]
rs9869902	0.82[EUR][1000 genomes]
rs9875381	0.85[EUR][1000 genomes]
rs9883252	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877093	chr3:85101501-85194054	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590897	chr3:85122624-85187085	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv877094	chr3:85124697-85253981	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85151600-85161200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:85153000-85168200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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