Variant report

Variant	rs2202805
Chromosome Location	chr4:129187444-129187445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11098953	0.85[ASN][1000 genomes]
rs11098954	0.85[ASN][1000 genomes]
rs11728141	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11733374	0.96[EUR][1000 genomes]
rs12650034	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13103317	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13103695	0.96[EUR][1000 genomes]
rs1391980	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1403125	0.96[EUR][1000 genomes]
rs1522432	0.96[EUR][1000 genomes]
rs1829726	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1851399	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1851400	0.96[EUR][1000 genomes]
rs2036687	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2101808	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2391257	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28609279	0.86[ASN][1000 genomes]
rs290004	0.81[ASN][1000 genomes]
rs34174952	0.96[EUR][1000 genomes]
rs34837036	0.81[ASN][1000 genomes]
rs3755896	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4016	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs430431	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4624668	0.96[EUR][1000 genomes]
rs4975180	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4975220	0.96[EUR][1000 genomes]
rs4975299	0.85[ASN][1000 genomes]
rs62318161	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6814132	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6816625	0.86[ASN][1000 genomes]
rs6842987	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6849992	0.86[ASN][1000 genomes]
rs7666566	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7679633	0.96[EUR][1000 genomes]
rs7691103	0.96[EUR][1000 genomes]
rs9790593	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390887	chr4:128932563-129207255	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3416618	chr4:129181482-129188750	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129173800-129207400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:129178600-129190000	Weak transcription	NHDF-Ad	bronchial
3	chr4:129183400-129191200	Weak transcription	Fetal Brain Male	brain
4	chr4:129184600-129206200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:129186000-129188000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:129186400-129191000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr4:129186600-129187600	Weak transcription	A549	lung
8	chr4:129186600-129191000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:129186800-129190200	Weak transcription	Osteobl	bone
10	chr4:129186800-129190800	Weak transcription	HUVEC	blood vessel
11	chr4:129187200-129190000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:129187200-129190000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr4:129187200-129190800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr4:129187200-129191200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:129187200-129191200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:129187200-129191200	Weak transcription	Fetal Thymus	thymus
17	chr4:129187400-129190000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:129187400-129190400	Weak transcription	Adipose Nuclei	Adipose
19	chr4:129187400-129190600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:129187400-129190600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:129187400-129191200	Weak transcription	Liver	Liver

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