Variant report
| Variant | rs2203463 |
|---|---|
| Chromosome Location | chr1:105131984-105131985 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10748476 | 0.81[ASN][1000 genomes] |
| rs10881181 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11184197 | 0.89[EUR][1000 genomes] |
| rs11184198 | 0.89[EUR][1000 genomes] |
| rs11184217 | 0.82[ASN][1000 genomes] |
| rs11184219 | 0.82[ASN][1000 genomes] |
| rs11184220 | 0.80[ASN][1000 genomes] |
| rs11184221 | 0.94[EUR][1000 genomes] |
| rs1118861 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11488067 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11584387 | 0.82[ASN][1000 genomes] |
| rs11589483 | 0.82[ASN][1000 genomes] |
| rs12041079 | 0.82[ASN][1000 genomes] |
| rs12217156 | 0.82[ASN][1000 genomes] |
| rs12742105 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2037113 | 0.96[EUR][1000 genomes] |
| rs2222034 | 0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2873456 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs35439995 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4326627 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4469719 | 0.80[ASN][1000 genomes] |
| rs7536905 | 0.82[ASN][1000 genomes] |
| rs7540893 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7544188 | 0.82[ASN][1000 genomes] |
| rs7548092 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1010903 | chr1:104483363-105468941 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2762170 | chr1:104817700-105411596 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv872081 | chr1:105009637-105455991 | Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv1004836 | chr1:105104358-105173095 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv999490 | chr1:105105338-105173095 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv1013052 | chr1:105105338-105175991 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv547218 | chr1:105111443-105134662 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:105127800-105134800 | Weak transcription | Primary B cells from peripheral blood | blood |
