Variant report

Variant	rs2206646
Chromosome Location	chr20:24361679-24361680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16986523	0.89[AFR][1000 genomes]
rs1997790	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050202	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036762	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049637	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049640	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049641	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049644	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049656	0.80[EUR][1000 genomes]
rs6114685	0.89[AFR][1000 genomes]
rs6132729	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24357800-24362800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr20:24358000-24362400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr20:24358000-24362800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr20:24359000-24363200	Enhancers	Brain Germinal Matrix	brain
5	chr20:24359800-24363800	Enhancers	Brain Hippocampus Middle	brain
6	chr20:24359800-24364000	Enhancers	Brain Substantia Nigra	brain
7	chr20:24360000-24362000	Weak transcription	Fetal Brain Male	brain
8	chr20:24360400-24362000	Enhancers	Brain Cingulate Gyrus	brain
9	chr20:24360400-24363400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr20:24360400-24364000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr20:24360600-24362600	Weak transcription	Colon Smooth Muscle	Colon
12	chr20:24360600-24363000	Weak transcription	Fetal Lung	lung
13	chr20:24360600-24363800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr20:24360600-24365200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr20:24360600-24370000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr20:24360800-24363000	Weak transcription	Brain Anterior Caudate	brain
17	chr20:24361000-24363000	Weak transcription	Ovary	ovary
18	chr20:24361200-24362800	Weak transcription	Fetal Stomach	stomach
19	chr20:24361600-24363000	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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