Variant report

Variant	rs220739
Chromosome Location	chr6:165832681-165832682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1759948	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220740	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs220741	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220742	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220743	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220744	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220745	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220746	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220747	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs220748	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220750	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220753	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs220754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220760	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220765	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220771	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs220773	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs220779	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs220782	0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs220785	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs220786	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs220787	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs220791	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs220792	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs220794	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs220795	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs220796	1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs220813	0.89[JPT][hapmap]
rs572291	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432982	chr6:165528589-165835589	Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv605245	chr6:165542686-165845903	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1031648	chr6:165544569-165841029	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv432983	chr6:165554403-165851585	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv830863	chr6:165803464-165970091	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv886929	chr6:165821402-165850480	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv886930	chr6:165823608-165850480	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165747600-165853000	Weak transcription	A549	lung
2	chr6:165772000-165835800	Weak transcription	Fetal Kidney	kidney
3	chr6:165788000-165856800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:165791400-165834000	Weak transcription	Brain Anterior Caudate	brain
5	chr6:165806400-165862000	Weak transcription	Right Ventricle	heart
6	chr6:165814200-165853800	Weak transcription	Fetal Lung	lung
7	chr6:165816800-165850600	Weak transcription	Aorta	Aorta
8	chr6:165817000-165835800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:165818400-165835800	Weak transcription	Fetal Brain Male	brain
10	chr6:165818400-165848000	Weak transcription	Spleen	Spleen
11	chr6:165818800-165847200	Weak transcription	Fetal Heart	heart
12	chr6:165822800-165833800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:165823000-165833600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:165823200-165834400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:165824600-165840400	Weak transcription	Ovary	ovary
16	chr6:165825600-165856200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:165826600-165856000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:165827800-165833000	Weak transcription	Adipose Nuclei	Adipose
19	chr6:165829400-165844400	Weak transcription	Hela-S3	cervix
20	chr6:165829800-165837800	Weak transcription	Brain Angular Gyrus	brain
21	chr6:165830000-165833400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr6:165830600-165833200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:165831000-165862800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr6:165831200-165832800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:165831800-165845400	Weak transcription	Placenta	Placenta
26	chr6:165832000-165840400	Weak transcription	HSMMtube	muscle
27	chr6:165832000-165845800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:165832200-165833800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:165832200-165834400	Weak transcription	Brain Germinal Matrix	brain
30	chr6:165832200-165839200	Weak transcription	Fetal Muscle Leg	muscle
31	chr6:165832200-165839600	Weak transcription	HSMM	muscle
32	chr6:165832200-165839800	Weak transcription	Fetal Brain Female	brain
33	chr6:165832200-165840200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:165832200-165840400	Weak transcription	Left Ventricle	heart
35	chr6:165832200-165856800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:165832200-165856800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr6:165832200-165858800	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links