Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10738482	0.82[MEX][hapmap]
rs10738485	0.82[MEX][hapmap]
rs12341417	0.81[CEU][hapmap];0.81[CHB][hapmap];0.85[CHD][hapmap]
rs1536073	0.85[CHB][hapmap];0.81[MEX][hapmap]
rs1536075	0.95[CHB][hapmap];0.82[YRI][hapmap]
rs2025557	0.84[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap]
rs2182084	0.86[MEX][hapmap];0.84[TSI][hapmap]
rs2182090	0.84[TSI][hapmap]
rs2209438	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs2209439	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs3780232	0.82[MEX][hapmap]
rs3780234	0.86[MEX][hapmap];0.82[TSI][hapmap]
rs3808689	0.84[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap]
rs3808690	0.84[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3808700	0.91[MEX][hapmap]
rs3808708	0.82[MEX][hapmap]
rs3808712	0.82[MEX][hapmap]
rs3808713	0.82[MEX][hapmap];0.87[TSI][hapmap]
rs3808718	0.82[MEX][hapmap];0.80[TSI][hapmap]
rs4418424	0.82[MEX][hapmap];0.80[TSI][hapmap]
rs4601434	0.83[TSI][hapmap]
rs7021704	0.80[ASN][1000 genomes]
rs7021836	0.86[MEX][hapmap]
rs717373	0.85[CHB][hapmap];0.80[CHD][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes]
rs7850335	1.00[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs7870919	0.81[MEX][hapmap];0.82[TSI][hapmap]
rs7874762	0.85[TSI][hapmap]
rs7875763	0.82[MEX][hapmap];0.82[TSI][hapmap]
rs998599	0.91[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1016971	chr9:17648242-17720176	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv1021022	chr9:17649360-17723730	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv466279	chr9:17699981-17726581	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv613705	chr9:17699981-17726581	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2209437	IFNA8	cis	parietal	SCAN
rs2209437	IFNA2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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