Variant report
| Variant | rs2209438 |
|---|---|
| Chromosome Location | chr9:17715667-17715668 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1000770 | 0.81[EUR][1000 genomes] |
| rs10117049 | 0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10738482 | 0.80[JPT][hapmap] |
| rs10810822 | 0.80[JPT][hapmap] |
| rs12341417 | 0.93[CEU][hapmap];0.89[CHB][hapmap] |
| rs1536073 | 0.95[CHB][hapmap];0.89[JPT][hapmap] |
| rs1536075 | 0.85[CHB][hapmap] |
| rs2025557 | 0.92[CEU][hapmap];0.89[CHB][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2025558 | 0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2025559 | 0.85[CHB][hapmap] |
| rs2182086 | 0.81[JPT][hapmap] |
| rs2209437 | 0.88[CEU][hapmap];0.81[CHB][hapmap] |
| rs2209439 | 0.93[CEU][hapmap];0.89[CHB][hapmap] |
| rs3808689 | 0.96[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap] |
| rs3808690 | 0.96[CEU][hapmap];0.85[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3808700 | 0.81[EUR][1000 genomes] |
| rs3808714 | 0.81[JPT][hapmap] |
| rs3808719 | 0.81[JPT][hapmap] |
| rs3808723 | 0.81[EUR][1000 genomes] |
| rs7021704 | 0.85[ASN][1000 genomes] |
| rs7031459 | 0.80[EUR][1000 genomes] |
| rs717373 | 0.95[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7850335 | 0.80[CHB][hapmap] |
| rs7875763 | 0.85[CHB][hapmap] |
| rs998599 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016971 | chr9:17648242-17720176 | Enhancers Weak transcription Active TSS Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| 2 | nsv1021022 | chr9:17649360-17723730 | Enhancers Weak transcription Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv892675 | chr9:17694823-17790526 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv466279 | chr9:17699981-17726581 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| 5 | nsv613705 | chr9:17699981-17726581 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
