Variant report

Variant	rs2210055
Chromosome Location	chr14:65995356-65995357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17102786	1.00[AFR][1000 genomes]
rs72714417	1.00[AFR][1000 genomes]
rs72714459	1.00[AFR][1000 genomes]
rs72716413	1.00[AFR][1000 genomes]
rs72716419	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65981400-65996800	Weak transcription	Small Intestine	intestine
2	chr14:65984800-66003000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr14:65985000-66025200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr14:65994400-65995400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:65994400-65995600	ZNF genes & repeats	Aorta	Aorta
6	chr14:65994600-65995400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:65994600-65995400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:65994600-65995400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
9	chr14:65994600-65995400	ZNF genes & repeats	Gastric	stomach
10	chr14:65994600-65996400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr14:65994600-65996400	ZNF genes & repeats	Fetal Intestine Small	intestine
12	chr14:65994600-65996600	ZNF genes & repeats	Primary T cells from cord blood	blood
13	chr14:65994800-65995400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
14	chr14:65994800-65995400	ZNF genes & repeats	Brain Hippocampus Middle	brain
15	chr14:65994800-65995400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
16	chr14:65994800-65996600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:65995000-65995400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
18	chr14:65995000-65995400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr14:65995000-65995400	ZNF genes & repeats	Esophagus	oesophagus
20	chr14:65995000-65995400	ZNF genes & repeats	Thymus	Thymus
21	chr14:65995000-65995800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
22	chr14:65995200-65995400	ZNF genes & repeats	Ovary	ovary
23	chr14:65995200-65995400	ZNF genes & repeats	Pancreas	Pancrea
24	chr14:65995200-66028000	Weak transcription	Dnd41	blood

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