Variant report

Variant	rs2210831
Chromosome Location	chr1:76738375-76738376
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11162109	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12403092	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1335863	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1335864	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1414480	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs1414483	1.00[CEU][hapmap];0.84[ASN][1000 genomes]
rs1414484	1.00[CEU][hapmap];0.84[ASN][1000 genomes]
rs1414485	1.00[CEU][hapmap];0.85[ASN][1000 genomes]
rs1414487	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1537784	1.00[CEU][hapmap]
rs17098538	1.00[CEU][hapmap];0.84[ASN][1000 genomes]
rs2065794	0.85[ASN][1000 genomes]
rs2210830	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2225784	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2225785	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2392037	1.00[CEU][hapmap]
rs3851267	1.00[CEU][hapmap]
rs3904687	1.00[CEU][hapmap]
rs3920772	1.00[CEU][hapmap];0.80[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6593527	1.00[CEU][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6593528	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6657540	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6695042	1.00[CEU][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7514851	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7516589	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9437391	0.86[EUR][1000 genomes]
rs9437407	1.00[CEU][hapmap]
rs945365	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1499	chr1:76704981-76749688	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76726400-76740000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr1:76727400-76744800	Weak transcription	Aorta	Aorta
3	chr1:76735000-76740200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:76735000-76743400	Weak transcription	Fetal Kidney	kidney
5	chr1:76735200-76744600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:76735200-76745000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:76735400-76744200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:76735600-76739600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr1:76735600-76740000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:76735600-76750600	Weak transcription	Left Ventricle	heart
11	chr1:76736400-76744400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr1:76736600-76745000	Weak transcription	Right Atrium	heart
13	chr1:76736800-76738600	Weak transcription	Brain Anterior Caudate	brain
14	chr1:76737000-76739200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr1:76737600-76739000	Weak transcription	Primary T cells from cord blood	blood
16	chr1:76737600-76740200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:76738000-76739400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr1:76738200-76738400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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