Variant report

Variant	rs2215154
Chromosome Location	chr7:147373013-147373014
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1404736	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1404738	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17170638	0.90[AMR][1000 genomes]
rs1830043	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2190915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2373173	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs2373174	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs2373175	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs2373176	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs2888514	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs2888515	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs4310123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4379380	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4383900	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4427087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4436047	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4486105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4487669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4520083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7457657	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs758259	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs7803219	0.90[AMR][1000 genomes]
rs851734	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147370800-147374800	Weak transcription	Brain Hippocampus Middle	brain
2	chr7:147372800-147373200	Enhancers	Osteobl	bone
3	chr7:147372800-147373600	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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