Variant report

Variant	rs2215625
Chromosome Location	chr2:210601209-210601210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 191 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:189)

rs_ID	r²[population]
rs10165558	0.90[ASN][1000 genomes]
rs10169017	0.84[ASN][1000 genomes]
rs10172200	0.92[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs10183590	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10183604	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10189911	0.88[ASN][1000 genomes]
rs10193321	0.84[ASN][1000 genomes]
rs10196314	0.85[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs10196600	0.92[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs10206817	0.89[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs10490021	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10490022	0.88[EUR][1000 genomes]
rs10804176	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10932305	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10932306	0.88[EUR][1000 genomes]
rs11674672	0.85[EUR][1000 genomes]
rs11674950	0.88[EUR][1000 genomes]
rs11677476	0.85[EUR][1000 genomes]
rs11677489	0.88[EUR][1000 genomes]
rs11677975	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11678044	0.81[EUR][1000 genomes]
rs11679862	0.85[EUR][1000 genomes]
rs11680007	0.81[JPT][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs11680964	0.81[JPT][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs11682692	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11687043	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11689771	0.88[EUR][1000 genomes]
rs11691800	0.89[ASN][1000 genomes]
rs11691894	0.89[ASN][1000 genomes]
rs11692075	0.92[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs11692345	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11692608	0.81[JPT][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs11693202	0.88[EUR][1000 genomes]
rs11884376	0.88[EUR][1000 genomes]
rs11887161	0.88[EUR][1000 genomes]
rs11898077	0.90[EUR][1000 genomes]
rs11900602	0.88[EUR][1000 genomes]
rs12105654	0.94[EUR][1000 genomes]
rs12105660	0.92[EUR][1000 genomes]
rs12613705	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12614031	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12615372	0.88[JPT][hapmap]
rs12615516	0.88[EUR][1000 genomes]
rs12616589	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12618080	0.91[CHB][hapmap];0.88[CHD][hapmap];0.88[JPT][hapmap];0.85[MEX][hapmap];0.84[ASN][1000 genomes]
rs12619203	0.88[EUR][1000 genomes]
rs12619253	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12619409	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12620654	0.88[JPT][hapmap]
rs12622305	0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs13385585	0.92[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs13409134	0.89[ASN][1000 genomes]
rs13419929	0.87[JPT][hapmap]
rs13422521	0.86[ASN][1000 genomes]
rs13423127	0.86[ASN][1000 genomes]
rs1476876	0.81[JPT][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs1476877	0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs1509465	0.88[JPT][hapmap]
rs1509468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1509469	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1509470	0.83[ASN][1000 genomes]
rs16843329	0.92[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs16843351	0.85[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs16843354	0.92[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs16843360	0.92[CHB][hapmap];0.88[CHD][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs16843382	0.92[CEU][hapmap];0.92[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.84[ASN][1000 genomes]
rs16843421	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16843453	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16843515	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16843544	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16843614	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16843618	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16843626	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16843651	0.91[ASN][1000 genomes]
rs169636	0.81[JPT][hapmap]
rs2048250	0.88[JPT][hapmap]
rs2098204	0.81[EUR][1000 genomes]
rs2191910	0.92[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs2215624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2239552	0.92[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.85[MEX][hapmap];0.91[ASN][1000 genomes]
rs2239553	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2239672	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2268042	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2268044	0.92[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.91[ASN][1000 genomes]
rs2268045	0.91[ASN][1000 genomes]
rs2271252	0.92[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs2284359	0.91[ASN][1000 genomes]
rs2284360	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2286849	0.92[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs2286850	0.92[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs2300154	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2366112	0.88[JPT][hapmap]
rs2663647	0.86[ASN][1000 genomes]
rs2663648	0.88[JPT][hapmap]
rs2663649	0.92[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs2663650	0.81[ASN][1000 genomes]
rs2663651	0.92[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs2663653	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs2663658	0.83[ASN][1000 genomes]
rs2663659	0.83[CHD][hapmap];0.88[JPT][hapmap]
rs2710477	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2710479	0.92[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2710482	0.92[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs2710486	0.88[JPT][hapmap]
rs28435689	0.84[ASN][1000 genomes]
rs28666486	0.89[ASN][1000 genomes]
rs28758270	0.89[ASN][1000 genomes]
rs288079	0.82[JPT][hapmap]
rs288081	0.82[JPT][hapmap]
rs288087	0.82[JPT][hapmap]
rs35337581	0.85[EUR][1000 genomes]
rs35872449	0.88[EUR][1000 genomes]
rs3738935	0.92[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs3754597	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3768810	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3768811	0.91[ASN][1000 genomes]
rs3768813	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3768814	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3768815	0.92[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs3768816	0.92[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs3768820	0.89[ASN][1000 genomes]
rs3768821	0.86[ASN][1000 genomes]
rs3768822	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs3768823	0.89[ASN][1000 genomes]
rs3768826	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3768827	0.86[ASN][1000 genomes]
rs3768828	0.86[ASN][1000 genomes]
rs3768830	0.86[ASN][1000 genomes]
rs3768832	0.92[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs3768833	0.92[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs3768834	0.92[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs3768835	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3820746	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3820748	0.92[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs3886931	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4673486	0.92[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.80[YRI][hapmap];0.91[ASN][1000 genomes]
rs56659802	0.89[ASN][1000 genomes]
rs56825045	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57305145	0.81[EUR][1000 genomes]
rs57542539	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57637604	0.88[EUR][1000 genomes]
rs57853945	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58248939	0.88[EUR][1000 genomes]
rs58295121	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58525719	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58779755	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59155421	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59555743	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60138527	0.83[ASN][1000 genomes]
rs60161291	0.88[EUR][1000 genomes]
rs60640585	0.88[EUR][1000 genomes]
rs61333809	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61356588	0.88[EUR][1000 genomes]
rs61420319	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6709925	0.92[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs6716831	0.88[EUR][1000 genomes]
rs6717554	0.92[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs6720659	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6724834	0.92[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs6726061	0.86[CHD][hapmap];0.88[JPT][hapmap]
rs6733319	0.86[CHD][hapmap];0.88[JPT][hapmap]
rs6742314	0.81[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs6746029	0.92[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs723683	0.92[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap]
rs73074733	0.90[EUR][1000 genomes]
rs73074750	0.88[EUR][1000 genomes]
rs73074751	0.88[EUR][1000 genomes]
rs73074763	0.88[EUR][1000 genomes]
rs73074778	0.88[EUR][1000 genomes]
rs73074779	0.88[EUR][1000 genomes]
rs73074784	0.88[EUR][1000 genomes]
rs73074787	0.88[EUR][1000 genomes]
rs73074791	0.88[EUR][1000 genomes]
rs73074801	0.85[EUR][1000 genomes]
rs73076704	0.85[EUR][1000 genomes]
rs73076710	0.85[EUR][1000 genomes]
rs741006	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs741007	0.92[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs7564369	0.81[JPT][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs7567257	0.86[ASN][1000 genomes]
rs7594601	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7595017	0.88[EUR][1000 genomes]
rs7596811	0.86[ASN][1000 genomes]
rs906831	0.86[CHD][hapmap];0.88[JPT][hapmap]
rs9288410	0.86[CHD][hapmap];0.88[JPT][hapmap]
rs962475	0.92[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs975551	0.81[JPT][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs975552	0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs994862	0.92[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875765	chr2:210537660-210618203	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2215625	RAB32	trans	lymphoblastoid	seeQTL
rs2215625	LANCL1	cis	lymphoblastoid	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210595200-210601400	Weak transcription	Aorta	Aorta
2	chr2:210595800-210602200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:210598400-210603000	Weak transcription	Fetal Brain Female	brain
4	chr2:210599600-210603200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:210599600-210604000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:210599800-210603000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr2:210600000-210601600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:210600600-210602400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:210600800-210603400	Weak transcription	Brain Germinal Matrix	brain

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