Variant report

Variant	rs2219186
Chromosome Location	chr5:97715262-97715263
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10067255	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10515275	0.89[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs11241318	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11744068	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11960474	0.85[EUR][1000 genomes]
rs13161187	0.85[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs13185967	0.89[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs13190416	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13359215	0.85[ASN][1000 genomes]
rs1378439	0.96[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1378440	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1378441	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1455418	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1455419	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1455420	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1455422	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1455423	0.85[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs1455427	0.90[ASN][1000 genomes]
rs17165927	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2887280	0.96[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34750082	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35371994	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4703069	0.85[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap]
rs56218605	0.85[EUR][1000 genomes]
rs56308227	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61434460	0.84[ASN][1000 genomes]
rs6594728	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6859633	0.89[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs7713002	0.89[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7727877	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9326968	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs961713	0.89[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv4928	chr5:97689980-97734899	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97707200-97719200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:97713800-97722200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:97714200-97725800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:97715000-97715600	Enhancers	NHDF-Ad	bronchial

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