Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10157171	0.82[AFR][1000 genomes]
rs1022178	0.82[AFR][1000 genomes]
rs10746397	0.97[AFR][1000 genomes]
rs10863547	0.82[AFR][1000 genomes]
rs10863548	0.97[AFR][1000 genomes]
rs11118540	0.97[AFR][1000 genomes]
rs11118547	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12087378	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1338769	0.97[AFR][1000 genomes]
rs1338772	0.97[AFR][1000 genomes]
rs1511696	0.97[AFR][1000 genomes]
rs17007606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17007616	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1999935	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1999937	0.97[AFR][1000 genomes]
rs3860320	0.93[AFR][1000 genomes]
rs4105051	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274798	0.92[EUR][1000 genomes]
rs4282827	0.97[AFR][1000 genomes]
rs6684421	0.97[AFR][1000 genomes]
rs7554825	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001681	chr1:220425057-220548325	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv535298	chr1:220425057-220548325	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220542400-220552400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:220543600-220552000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:220544800-220548000	Weak transcription	Psoas Muscle	Psoas
4	chr1:220545000-220552000	Weak transcription	Hela-S3	cervix
5	chr1:220545200-220548000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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