Variant report
| Variant | rs2223599 |
|---|---|
| Chromosome Location | chr6:56072946-56072947 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs12190324 | 0.80[AMR][1000 genomes] |
| rs12199712 | 0.85[AMR][1000 genomes] |
| rs12199742 | 0.81[AMR][1000 genomes] |
| rs1319111 | 0.85[AMR][1000 genomes] |
| rs1925143 | 0.86[AMR][1000 genomes] |
| rs1925149 | 0.80[AMR][1000 genomes] |
| rs1925189 | 0.83[AMR][1000 genomes] |
| rs2223600 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2328675 | 0.82[AMR][1000 genomes] |
| rs2397208 | 0.86[AMR][1000 genomes] |
| rs2876630 | 0.84[AMR][1000 genomes] |
| rs3846922 | 0.80[AMR][1000 genomes] |
| rs3846923 | 0.86[AMR][1000 genomes] |
| rs4126555 | 0.80[AMR][1000 genomes] |
| rs4126556 | 0.80[AMR][1000 genomes] |
| rs4126557 | 0.80[AMR][1000 genomes] |
| rs4126558 | 0.80[AMR][1000 genomes] |
| rs4495274 | 0.82[AMR][1000 genomes] |
| rs4554321 | 0.87[AMR][1000 genomes] |
| rs4609034 | 0.84[AMR][1000 genomes] |
| rs4715588 | 0.84[AMR][1000 genomes] |
| rs4715593 | 0.86[AMR][1000 genomes] |
| rs6459128 | 0.82[AMR][1000 genomes] |
| rs6459129 | 0.84[AMR][1000 genomes] |
| rs6459133 | 0.84[AMR][1000 genomes] |
| rs6459136 | 0.84[AMR][1000 genomes] |
| rs6904431 | 0.80[AMR][1000 genomes] |
| rs6904899 | 0.86[AMR][1000 genomes] |
| rs6908195 | 0.86[AMR][1000 genomes] |
| rs6911907 | 0.84[AMR][1000 genomes] |
| rs6914495 | 0.86[AMR][1000 genomes] |
| rs6914892 | 0.86[AMR][1000 genomes] |
| rs6934945 | 0.80[AMR][1000 genomes] |
| rs6935152 | 0.86[AMR][1000 genomes] |
| rs6935200 | 0.80[AMR][1000 genomes] |
| rs6939465 | 0.85[AMR][1000 genomes] |
| rs7450147 | 0.86[AMR][1000 genomes] |
| rs7744276 | 0.85[AMR][1000 genomes] |
| rs7754787 | 0.86[AMR][1000 genomes] |
| rs7762422 | 0.80[AMR][1000 genomes] |
| rs9382595 | 0.80[AMR][1000 genomes] |
| rs9396181 | 0.80[AMR][1000 genomes] |
| rs9475621 | 0.84[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv885911 | chr6:55789704-56143231 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:56064000-56090800 | Weak transcription | Fetal Lung | lung |
