Variant report

Variant	rs2224496
Chromosome Location	chr11:34264147-34264148
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL1	chr11:34263355-34264608	HCT-116	colon:	n/a	chr11:34263775-34263786 chr11:34263776-34263787 chr11:34263773-34263784
2	NR3C1	chr11:34263529-34264252	A549	lung:	n/a	chr11:34263988-34264001 chr11:34263861-34263875
3	FOS	chr11:34263605-34264170	MCF10A-Er-Src	breast:	n/a	chr11:34263776-34263787 chr11:34263773-34263784
4	MTA3	chr11:34263444-34264254	GM12878	blood:	n/a	n/a
5	MAX	chr11:34263465-34264446	HCT-116	colon:	n/a	n/a
6	PML	chr11:34263389-34264188	GM12878	blood:	n/a	n/a
7	MAX	chr11:34263471-34264491	A549	lung:	n/a	n/a
8	GATA1	chr11:34263534-34264156	PBDE	blood:	n/a	chr11:34263778-34263787 chr11:34263810-34263820
9	JUN	chr11:34263439-34264731	K562	blood:	n/a	chr11:34263776-34263787 chr11:34263773-34263784
10	RUNX3	chr11:34263296-34264190	GM12878	blood:	n/a	n/a
11	USF1	chr11:34263605-34264178	K562	blood:	n/a	n/a
12	MAX	chr11:34263591-34264175	GM12878	blood:	n/a	n/a
13	USF2	chr11:34263997-34264156	GM12878	blood:	n/a	n/a
14	SMARCC1	chr11:34263482-34264570	Hela-S3	cervix:	n/a	n/a
15	MAX	chr11:34263577-34264287	A549	lung:	n/a	n/a
16	UBTF	chr11:34263655-34264164	K562	blood:	n/a	n/a
17	NR3C1	chr11:34263600-34264159	A549	lung:	n/a	chr11:34263988-34264001 chr11:34263861-34263875
18	NR3C1	chr11:34263575-34264152	A549	lung:	n/a	chr11:34263988-34264001 chr11:34263861-34263875
19	NR2F2	chr11:34263501-34265071	K562	blood:	n/a	n/a
20	MAX	chr11:34263532-34264196	K562	blood:	n/a	n/a

Variant related genes	Relation type
ABTB2	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11822418	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897204	chr11:34248229-34271712	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv897206	chr11:34253421-34337564	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
9	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34245200-34264200	Weak transcription	Aorta	Aorta
2	chr11:34256000-34270600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:34256200-34266800	Weak transcription	Spleen	Spleen
4	chr11:34256200-34267200	Weak transcription	Psoas Muscle	Psoas
5	chr11:34256400-34265400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:34256400-34265600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:34257200-34265000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:34257600-34265000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:34257600-34265400	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:34258200-34265400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:34258400-34266600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:34258400-34266800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:34258600-34265600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:34258600-34266200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:34261600-34265600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:34261600-34272600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr11:34261800-34265000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:34261800-34265400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:34262000-34264200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:34262000-34265000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr11:34262000-34265200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:34262000-34265200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr11:34262000-34265200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:34262000-34265400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr11:34262000-34266000	Weak transcription	Brain Germinal Matrix	brain
26	chr11:34262400-34265000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:34263200-34264800	Enhancers	Primary B cells from peripheral blood	blood
28	chr11:34263200-34265000	Enhancers	Duodenum Mucosa	Duodenum
29	chr11:34263200-34267200	Enhancers	Stomach Mucosa	stomach
30	chr11:34263200-34267800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr11:34263400-34264200	Flanking Active TSS	GM12878-XiMat	blood
32	chr11:34263400-34264200	Flanking Active TSS	K562	blood
33	chr11:34263400-34264200	Enhancers	NHLF	lung
34	chr11:34263400-34264400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:34263400-34265800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:34263400-34265800	Enhancers	Muscle Satellite Cultured Cells	--
37	chr11:34263400-34265800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:34263400-34266000	Flanking Active TSS	Hela-S3	cervix
39	chr11:34263400-34266200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:34263400-34266400	Enhancers	Placenta	Placenta
41	chr11:34263400-34266600	Enhancers	Placenta Amnion	Placenta Amnion
42	chr11:34263400-34266800	Enhancers	Fetal Intestine Large	intestine
43	chr11:34263400-34267200	Enhancers	HSMM	muscle
44	chr11:34263400-34267600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:34263400-34267600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:34263400-34267800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:34263400-34267800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:34263400-34267800	Enhancers	Fetal Intestine Small	intestine
49	chr11:34263400-34267800	Enhancers	NHEK	skin
50	chr11:34263400-34269400	Enhancers	HSMMtube	muscle

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