Variant report

Variant	rs2226850
Chromosome Location	chr11:56627240-56627241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11228836	0.81[ASN][1000 genomes]
rs11603620	0.81[ASN][1000 genomes]
rs12416998	0.81[ASN][1000 genomes]
rs12419314	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1613887	0.97[ASN][1000 genomes]
rs1632332	0.95[ASN][1000 genomes]
rs17640838	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs17640885	0.84[ASN][1000 genomes]
rs1783444	0.97[ASN][1000 genomes]
rs1783445	0.97[ASN][1000 genomes]
rs1783446	0.97[ASN][1000 genomes]
rs1783447	0.97[ASN][1000 genomes]
rs1783450	0.95[ASN][1000 genomes]
rs1783451	0.97[ASN][1000 genomes]
rs1783459	0.99[ASN][1000 genomes]
rs1783465	0.97[ASN][1000 genomes]
rs1792494	0.97[ASN][1000 genomes]
rs1792495	0.97[ASN][1000 genomes]
rs1792496	0.97[ASN][1000 genomes]
rs1792498	0.97[ASN][1000 genomes]
rs1792499	0.97[ASN][1000 genomes]
rs1792500	0.95[ASN][1000 genomes]
rs1892787	0.97[ASN][1000 genomes]
rs1938751	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938753	0.81[ASN][1000 genomes]
rs1938759	0.84[ASN][1000 genomes]
rs1938760	0.84[ASN][1000 genomes]
rs2226851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2374	0.97[ASN][1000 genomes]
rs4939095	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4939097	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523098	0.97[ASN][1000 genomes]
rs56210588	1.00[ASN][1000 genomes]
rs68039795	0.80[ASN][1000 genomes]
rs7118645	0.84[ASN][1000 genomes]
rs7119402	0.81[ASN][1000 genomes]
rs731744	0.81[ASN][1000 genomes]
rs737368	0.84[ASN][1000 genomes]
rs7930832	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7940288	0.81[ASN][1000 genomes]
rs7943283	0.81[ASN][1000 genomes]
rs7947879	0.84[ASN][1000 genomes]
rs947805	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048328	chr11:56471984-56649908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv2830406	chr11:56481955-56650124	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv468577	chr11:56503728-56704042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv555101	chr11:56503728-56704042	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv469960	chr11:56605222-56704042	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1045889	chr11:56624365-56737435	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv8830	chr11:56624702-56627905	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56623000-56629400	Weak transcription	Stomach Mucosa	stomach
2	chr11:56626800-56634200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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