Variant report

Variant	rs2227203
Chromosome Location	chr1:172879023-172879024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10753064	0.97[ASN][1000 genomes]
rs10798242	1.00[ASN][1000 genomes]
rs10912491	0.80[ASN][1000 genomes]
rs10912497	1.00[ASN][1000 genomes]
rs10912499	0.85[ASN][1000 genomes]
rs12025176	0.80[ASN][1000 genomes]
rs12035082	1.00[ASN][1000 genomes]
rs12037203	1.00[ASN][1000 genomes]
rs12037606	1.00[ASN][1000 genomes]
rs12088638	1.00[ASN][1000 genomes]
rs12097671	0.97[ASN][1000 genomes]
rs12407389	1.00[ASN][1000 genomes]
rs12565596	0.82[ASN][1000 genomes]
rs12739009	1.00[JPT][hapmap]
rs12748081	0.80[ASN][1000 genomes]
rs1883475	0.82[ASN][1000 genomes]
rs1894636	1.00[ASN][1000 genomes]
rs2051629	0.82[ASN][1000 genomes]
rs2187893	0.82[ASN][1000 genomes]
rs2213746	1.00[ASN][1000 genomes]
rs2422257	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2422260	1.00[ASN][1000 genomes]
rs35715673	0.80[ASN][1000 genomes]
rs4145468	0.80[ASN][1000 genomes]
rs4145469	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4916199	1.00[ASN][1000 genomes]
rs4916282	0.82[ASN][1000 genomes]
rs4916285	1.00[JPT][hapmap]
rs4916286	1.00[ASN][1000 genomes]
rs4916288	0.82[ASN][1000 genomes]
rs5028523	0.91[ASN][1000 genomes]
rs6668693	0.82[ASN][1000 genomes]
rs6688532	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7527986	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7528161	0.85[ASN][1000 genomes]
rs7539319	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs926472	1.00[ASN][1000 genomes]
rs926473	1.00[ASN][1000 genomes]
rs926474	1.00[ASN][1000 genomes]
rs974856	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3587	chr1:172836950-172882218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172878000-172880000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:172878400-172879400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:172878400-172879400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:172878400-172879400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:172878400-172879400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr1:172878400-172879600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:172878400-172879600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:172878400-172879600	Enhancers	Hela-S3	cervix
9	chr1:172878400-172879600	Enhancers	HMEC	breast
10	chr1:172878400-172879600	Enhancers	HSMM	muscle
11	chr1:172878400-172879600	Enhancers	NHDF-Ad	bronchial
12	chr1:172878400-172879600	Enhancers	NHEK	skin
13	chr1:172878400-172879600	Enhancers	NHLF	lung
14	chr1:172878400-172879600	Enhancers	Osteobl	bone
15	chr1:172878400-172879800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr1:172878400-172880000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:172878400-172880000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:172878400-172880000	Flanking Active TSS	A549	lung
19	chr1:172878600-172879200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:172878600-172879400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:172878600-172879600	Enhancers	HSMMtube	muscle
22	chr1:172878800-172879200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr1:172878800-172879400	Enhancers	K562	blood
24	chr1:172878800-172879800	Flanking Active TSS	HUVEC	blood vessel
25	chr1:172879000-172879400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:172879000-172879600	Flanking Active TSS	NH-A	brain

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