Variant report

Variant	rs2233915
Chromosome Location	chr9:116018501-116018502
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:115981374..115984099-chr9:116016863..116018969,2	MCF-7	breast:
2	chr9:116014996..116017587-chr9:116018102..116020800,2	K562	blood:
3	chr9:116016365..116018792-chr9:116102521..116104428,2	MCF-7	breast:
4	chr9:115985715..115987380-chr9:116017322..116019580,2	K562	blood:

Variant related genes	Relation type
ENSG00000136868	Chromatin interaction
ENSG00000148225	Chromatin interaction
ENSG00000119321	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73537011	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537095	1.00[AMR][1000 genomes]
rs73550250	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv893746	chr9:115983540-116022826	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115985000-116020800	Weak transcription	Aorta	Aorta
2	chr9:115985600-116020800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:115985800-116019000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:115985800-116021000	Weak transcription	Fetal Stomach	stomach
5	chr9:115987800-116021000	Weak transcription	Hela-S3	cervix
6	chr9:115989000-116019200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:115996000-116022200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr9:115996000-116031600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:115996200-116018600	Weak transcription	Primary T cells from cord blood	blood
10	chr9:115996200-116022400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr9:115996600-116019200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr9:116004400-116020400	Weak transcription	Fetal Thymus	thymus
13	chr9:116006200-116020400	Weak transcription	Psoas Muscle	Psoas
14	chr9:116007200-116019200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr9:116007200-116019400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr9:116007200-116020800	Weak transcription	Ovary	ovary
17	chr9:116008200-116037000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr9:116009600-116019000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:116009600-116020200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:116009600-116029800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr9:116010000-116020000	Weak transcription	GM12878-XiMat	blood
22	chr9:116010200-116031800	Weak transcription	Fetal Heart	heart
23	chr9:116011400-116020200	Weak transcription	A549	lung
24	chr9:116011400-116028800	Weak transcription	Fetal Kidney	kidney
25	chr9:116011600-116020600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr9:116011600-116021000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr9:116012000-116018600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:116012200-116019400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr9:116012200-116019400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr9:116013400-116020200	Weak transcription	Fetal Intestine Large	intestine
31	chr9:116013400-116020600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr9:116013400-116020800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr9:116013400-116020800	Weak transcription	Small Intestine	intestine
34	chr9:116013400-116022200	Weak transcription	Gastric	stomach
35	chr9:116014200-116021000	Weak transcription	Primary hematopoietic stem cells	blood
36	chr9:116014400-116019200	Weak transcription	Brain Hippocampus Middle	brain
37	chr9:116014400-116021000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr9:116014400-116022200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr9:116015000-116019800	Weak transcription	Placenta	Placenta
40	chr9:116015400-116020800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr9:116015400-116021000	Weak transcription	Thymus	Thymus
42	chr9:116016000-116020400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr9:116016000-116020800	Weak transcription	Brain Germinal Matrix	brain
44	chr9:116016200-116018600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr9:116016200-116019000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr9:116016200-116019400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr9:116016200-116020000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr9:116016400-116020000	Weak transcription	Fetal Brain Male	brain
49	chr9:116016400-116021000	Weak transcription	Lung	lung
50	chr9:116016400-116022200	Weak transcription	Rectal Smooth Muscle	rectum

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