Variant report

Variant	rs2236273
Chromosome Location	chr11:35302668-35302669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:35302462-35304328	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35284402..35286088-chr11:35300922..35302973,2	K562	blood:

Variant related genes	Relation type
ENSG00000255004	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10742334	0.85[EUR][1000 genomes]
rs10742335	0.86[EUR][1000 genomes]
rs10742336	0.86[EUR][1000 genomes]
rs10742337	0.86[EUR][1000 genomes]
rs10768124	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10836354	0.86[EUR][1000 genomes]
rs11033037	0.86[EUR][1000 genomes]
rs11033038	0.86[EUR][1000 genomes]
rs11033052	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1321677	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2180973	0.85[EUR][1000 genomes]
rs2273689	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2421765	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2421823	0.97[EUR][1000 genomes]
rs3794096	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3818275	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3847605	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3847606	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3847607	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3847608	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3847609	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3903687	0.86[AMR][1000 genomes]
rs4755393	0.86[EUR][1000 genomes]
rs4756200	0.86[EUR][1000 genomes]
rs4756208	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7105418	0.85[EUR][1000 genomes]
rs7130385	0.98[EUR][1000 genomes]
rs7929900	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7936564	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35265800-35305800	Weak transcription	HepG2	liver
2	chr11:35270400-35307000	Weak transcription	Fetal Brain Male	brain
3	chr11:35285800-35308800	Weak transcription	Gastric	stomach
4	chr11:35297600-35303000	Weak transcription	HSMMtube	muscle
5	chr11:35297600-35303400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:35297800-35303200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:35298000-35317200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:35298200-35303600	Weak transcription	A549	lung
9	chr11:35298200-35303800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:35298200-35326000	Weak transcription	Brain Substantia Nigra	brain
11	chr11:35298400-35303600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:35298400-35303600	Weak transcription	Osteobl	bone
13	chr11:35298600-35303800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr11:35298800-35303800	Weak transcription	Stomach Mucosa	stomach
15	chr11:35298800-35304000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:35298800-35306000	Weak transcription	Brain Anterior Caudate	brain
17	chr11:35299000-35303800	Weak transcription	Hela-S3	cervix
18	chr11:35299000-35308800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:35299000-35326600	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:35299600-35303600	Weak transcription	Esophagus	oesophagus
21	chr11:35299600-35303800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:35299600-35309800	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:35299800-35328600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:35300400-35309800	Strong transcription	Fetal Brain Female	brain
25	chr11:35300800-35303000	Strong transcription	Brain Germinal Matrix	brain
26	chr11:35301200-35303600	Weak transcription	Pancreas	Pancrea
27	chr11:35301800-35302800	Weak transcription	Liver	Liver
28	chr11:35302200-35303000	Enhancers	Fetal Stomach	stomach
29	chr11:35302200-35303600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:35302200-35304000	Enhancers	Adipose Nuclei	Adipose
31	chr11:35302200-35304200	Enhancers	Left Ventricle	heart
32	chr11:35302200-35304600	Enhancers	Fetal Muscle Leg	muscle
33	chr11:35302200-35304600	Enhancers	Right Atrium	heart
34	chr11:35302200-35304800	Enhancers	NHDF-Ad	bronchial
35	chr11:35302200-35305000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:35302400-35302800	Weak transcription	NHLF	lung
37	chr11:35302400-35303200	Enhancers	Stomach Smooth Muscle	stomach
38	chr11:35302400-35327000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:35302600-35303200	Weak transcription	Aorta	Aorta
40	chr11:35302600-35303600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:35302600-35303600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:35302600-35303600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr11:35302600-35303800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr11:35302600-35304800	Enhancers	Muscle Satellite Cultured Cells	--
45	chr11:35302600-35305000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr11:35302600-35309800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr11:35302600-35329000	Weak transcription	Brain Angular Gyrus	brain

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