Variant report

Variant	rs2237403
Chromosome Location	chr7:39448936-39448937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10239767	0.95[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs10242113	0.84[JPT][hapmap]
rs10259786	1.00[CEU][hapmap];0.80[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10261831	0.84[JPT][hapmap]
rs10262012	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10269203	0.92[ASN][1000 genomes]
rs10269280	0.95[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs10282168	0.88[EUR][1000 genomes]
rs17712872	0.92[ASN][1000 genomes]
rs17769600	0.91[ASN][1000 genomes]
rs17769607	0.95[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs17769624	0.92[ASN][1000 genomes]
rs1860115	0.95[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs2073542	0.85[JPT][hapmap]
rs2073543	0.84[JPT][hapmap]
rs2190891	0.95[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs2190892	0.83[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2190893	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2237369	0.85[JPT][hapmap]
rs2237373	0.85[JPT][hapmap]
rs2237374	0.82[JPT][hapmap]
rs2237390	0.85[JPT][hapmap]
rs2237391	0.95[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs2237393	0.92[ASN][1000 genomes]
rs2237400	0.95[YRI][hapmap]
rs2237402	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2237404	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2299127	0.85[JPT][hapmap]
rs2299128	0.85[JPT][hapmap]
rs2299129	0.95[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs2299130	0.82[CHB][hapmap];0.92[ASN][1000 genomes]
rs2299131	0.92[ASN][1000 genomes]
rs2299132	0.95[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs2302122	0.84[JPT][hapmap]
rs2302125	0.84[JPT][hapmap]
rs2876838	0.89[JPT][hapmap]
rs3778934	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3819420	0.95[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs3819421	0.95[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs3819422	0.95[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs3819423	0.92[ASN][1000 genomes]
rs3819426	0.95[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs56408610	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57998785	0.90[ASN][1000 genomes]
rs61223906	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6462917	0.95[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs887015	0.84[JPT][hapmap];0.81[YRI][hapmap]
rs933370	0.92[CEU][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv981456	chr7:39431071-39454006	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39446400-39453400	Weak transcription	Pancreas	Pancrea
2	chr7:39447200-39453400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:39447600-39453200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:39447800-39453400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:39447800-39453400	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:39448200-39453200	Weak transcription	Fetal Intestine Large	intestine
7	chr7:39448600-39453200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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