Variant report
Variant | rs2237765 |
---|---|
Chromosome Location | chr7:126369228-126369229 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:6 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:126345298..126347848-chr7:126367419..126370072,2 | K562 | blood: | |
2 | chr7:126363919..126365530-chr7:126368922..126370814,2 | K562 | blood: | |
3 | chr7:126359674..126361280-chr7:126368196..126369937,2 | K562 | blood: | |
4 | chr7:126368803..126371577-chr7:126373352..126375062,2 | K562 | blood: | |
5 | chr7:126338487..126341370-chr7:126368124..126371050,2 | K562 | blood: | |
6 | 7:126366539-126370331..7:126890676-126899918 | H1-hESC | embryonic stem cell: | embryo |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000179603 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1008905 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1024417 | 0.87[ASN][1000 genomes] |
rs1024418 | 0.93[ASN][1000 genomes] |
rs10279616 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12667118 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12706739 | 0.82[CEU][hapmap] |
rs13241983 | 0.82[CEU][hapmap] |
rs13243112 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1419482 | 0.82[CEU][hapmap] |
rs1579214 | 1.00[CEU][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1815973 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2237764 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2283068 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2283069 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2299492 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs2299497 | 0.87[ASN][1000 genomes] |
rs2299498 | 0.87[ASN][1000 genomes] |
rs2896374 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs34261190 | 0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs35009695 | 0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs3808152 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs3808153 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs3824011 | 0.86[ASN][1000 genomes] |
rs4728051 | 0.87[ASN][1000 genomes] |
rs4731321 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv529300 | chr7:125669493-126587858 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
2 | nsv1032938 | chr7:126067684-126587859 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv539119 | chr7:126067684-126587859 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
4 | nsv889187 | chr7:126219766-126478190 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:126367400-126369400 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
2 | chr7:126369200-126369400 | Enhancers | Pancreas | Pancrea |