Variant report

Variant	rs2237768
Chromosome Location	chr7:126381249-126381250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126371685..126373556-chr7:126380338..126382419,2	K562	blood:
2	7:126381218-126382023..7:126880504-126885902	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1008907	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10234189	0.88[EUR][1000 genomes]
rs10808227	0.96[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap]
rs10954134	0.96[CEU][hapmap]
rs10954135	0.96[CEU][hapmap]
rs11978951	0.88[CEU][hapmap]
rs1204516	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1204520	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs1204522	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs1204524	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1204526	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1204532	0.81[CHB][hapmap]
rs12154335	0.84[GIH][hapmap];0.89[TSI][hapmap]
rs12533543	0.84[GIH][hapmap];0.89[TSI][hapmap]
rs12534101	0.80[AMR][1000 genomes]
rs1361987	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1361990	0.84[GIH][hapmap];0.88[TSI][hapmap]
rs1419479	0.84[GIH][hapmap];0.89[TSI][hapmap]
rs1419480	0.84[GIH][hapmap];0.89[TSI][hapmap]
rs1419484	0.86[GIH][hapmap];0.89[TSI][hapmap]
rs1419490	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1419493	0.88[EUR][1000 genomes]
rs17684727	1.00[YRI][hapmap]
rs2027988	0.84[GIH][hapmap];0.86[TSI][hapmap]
rs2106308	0.82[GIH][hapmap];0.86[TSI][hapmap]
rs2106311	0.84[GIH][hapmap];0.89[TSI][hapmap]
rs2106312	0.84[GIH][hapmap];0.89[TSI][hapmap]
rs2157752	0.86[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap]
rs2237752	0.84[GIH][hapmap];0.89[TSI][hapmap]
rs2237762	0.88[EUR][1000 genomes]
rs2237767	0.96[CEU][hapmap]
rs2283070	0.96[CEU][hapmap]
rs2299470	0.84[GIH][hapmap];0.89[TSI][hapmap]
rs2299476	0.84[GIH][hapmap];0.89[TSI][hapmap]
rs2299491	0.86[GIH][hapmap];0.89[TSI][hapmap]
rs2299500	0.88[CEU][hapmap];0.91[GIH][hapmap]
rs2299521	0.83[AMR][1000 genomes]
rs2402816	0.86[GIH][hapmap];0.86[TSI][hapmap]
rs2402822	0.88[EUR][1000 genomes]
rs2896373	0.81[EUR][1000 genomes]
rs3808145	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs3808150	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs412791	0.86[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap]
rs4380862	0.88[EUR][1000 genomes]
rs62470209	0.81[AMR][1000 genomes]
rs6467092	0.84[GIH][hapmap];0.89[TSI][hapmap]
rs6963108	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6964806	0.84[GIH][hapmap];0.89[TSI][hapmap]
rs6969693	0.84[CEU][hapmap];0.93[EUR][1000 genomes]
rs6974018	0.88[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs728600	0.84[GIH][hapmap];0.89[TSI][hapmap]
rs737702	0.88[EUR][1000 genomes]
rs756900	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7779831	0.88[EUR][1000 genomes]
rs7780253	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7784073	0.88[CEU][hapmap];0.93[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7792592	0.88[GIH][hapmap];0.88[TSI][hapmap]
rs7804521	0.88[CEU][hapmap]
rs886176	0.88[CEU][hapmap];0.93[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9649507	0.96[CEU][hapmap];1.00[GIH][hapmap];0.81[MEX][hapmap];0.98[TSI][hapmap]
rs9942681	0.84[GIH][hapmap];0.88[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2237768	MEST	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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