Variant report

Variant	rs2237793
Chromosome Location	chr7:126780502-126780503
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11563782	1.00[CEU][hapmap]
rs12334074	0.82[CEU][hapmap]
rs17644601	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17862293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862309	1.00[JPT][hapmap]
rs17862333	0.82[CEU][hapmap]
rs17863210	0.82[CHB][hapmap]
rs17863211	1.00[CEU][hapmap]
rs17863212	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs17863237	0.82[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17864127	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs17864142	0.82[CEU][hapmap]
rs17864153	0.82[CEU][hapmap]
rs17864154	0.82[CEU][hapmap]
rs17864156	0.82[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17864165	0.82[CEU][hapmap]
rs17864170	0.82[CEU][hapmap]
rs17865066	0.82[CEU][hapmap]
rs17866036	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17866153	0.82[CEU][hapmap]
rs17866348	1.00[JPT][hapmap]
rs17866414	0.82[CEU][hapmap]
rs17866742	0.82[CEU][hapmap]
rs17867065	0.82[CEU][hapmap]
rs17867759	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs17867764	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17867770	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17867775	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17867806	0.82[CEU][hapmap]
rs17869212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1894730	0.82[CHB][hapmap]
rs2023641	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs6467111	1.00[JPT][hapmap]
rs7794734	1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1027369	chr7:126772111-126798871	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv437572	chr7:126772562-126781574	Inactive region	lncRNA	n/a	inside rSNPs	diseases
5	nsv8212	chr7:126775552-126781641	Inactive region	lncRNA	n/a	inside rSNPs	diseases
6	esv3476737	chr7:126776037-126781506	Inactive region	lncRNA	n/a	inside rSNPs	diseases
7	esv3476735	chr7:126776079-126781508	Inactive region	lncRNA	n/a	inside rSNPs	diseases
8	esv3476738	chr7:126776101-126781487	Inactive region	lncRNA	n/a	inside rSNPs	diseases
9	esv3476734	chr7:126776104-126781470	Inactive region	lncRNA	n/a	inside rSNPs	diseases
10	esv3476736	chr7:126776163-126781419	Inactive region	lncRNA	n/a	inside rSNPs	diseases
11	nsv499782	chr7:126776176-126781419	Inactive region	lncRNA	n/a	inside rSNPs	diseases
12	esv3476739	chr7:126776177-126781417	Inactive region	lncRNA	n/a	inside rSNPs	diseases
13	esv15450	chr7:126776235-126781390	Inactive region	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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