Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10131317	0.84[ASN][1000 genomes]
rs10483838	0.93[JPT][hapmap]
rs11844049	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11850350	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11852205	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2052014	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2239266	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2332706	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs28450218	0.84[ASN][1000 genomes]
rs28644384	0.84[ASN][1000 genomes]
rs28718774	0.85[ASN][1000 genomes]
rs3784054	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs41389946	0.93[JPT][hapmap]
rs41488847	0.93[JPT][hapmap]
rs4899413	0.84[ASN][1000 genomes]
rs4902972	0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs59707038	0.85[ASN][1000 genomes]
rs758235	0.80[CEU][hapmap]
rs8003097	0.81[CEU][hapmap]
rs8017221	0.93[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8017799	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs966815	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1053520	chr14:72485195-72537202	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72481000-72489200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72482400-72489400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:72487800-72489200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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