Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr14:72427240-72427932	U2OS	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:72400385..72403304-chr14:72425307..72428044,2	MCF-7	breast:
2	chr14:72423860..72426368-chr14:72427413..72429540,3	MCF-7	breast:
3	chr14:72427443..72429272-chr14:72430391..72433116,2	MCF-7	breast:

Variant related genes	Relation type
RGS6	TF binding region
ENSG00000182732	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10147777	0.82[ASN][1000 genomes]
rs11846754	0.82[ASN][1000 genomes]
rs17104975	0.86[ASN][1000 genomes]
rs17104979	0.84[JPT][hapmap];0.99[ASN][1000 genomes]
rs17105032	0.91[ASN][1000 genomes]
rs17105061	0.91[ASN][1000 genomes]
rs1860105	0.88[ASN][1000 genomes]
rs1989628	0.91[ASN][1000 genomes]
rs2190872	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2238274	0.88[ASN][1000 genomes]
rs2238275	0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs2238276	0.88[ASN][1000 genomes]
rs2238283	0.88[ASN][1000 genomes]
rs2238285	0.83[ASN][1000 genomes]
rs23219	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2332701	0.99[ASN][1000 genomes]
rs2332706	0.83[EUR][1000 genomes]
rs36327	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4902960	0.92[ASN][1000 genomes]
rs4902965	0.88[ASN][1000 genomes]
rs56731686	0.91[ASN][1000 genomes]
rs58002698	0.88[ASN][1000 genomes]
rs59307289	0.88[ASN][1000 genomes]
rs60545259	0.88[ASN][1000 genomes]
rs720391	0.91[ASN][1000 genomes]
rs764624	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72425400-72427800	Weak transcription	GM12878-XiMat	blood
2	chr14:72425600-72430800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:72425600-72431200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:72426200-72428400	Weak transcription	Fetal Heart	heart
5	chr14:72426800-72428200	Weak transcription	Right Ventricle	heart
6	chr14:72426800-72437200	Weak transcription	Left Ventricle	heart
7	chr14:72427400-72428200	Enhancers	Lung	lung
8	chr14:72427600-72427800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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